The receptor-CheW binding interface in bacterial chemotaxis.

The basic structural unit of the signaling complex in bacterial chemotaxis consists of the chemotaxis kinase CheA, the coupling protein CheW, and chemoreceptors. These complexes play an important role in regulating the kinase activity of CheA and in turn controlling the rotational bias of the flagellar motor. Although individual three-dimensional structures of CheA, CheW, and chemoreceptors have been determined, the interaction between chemoreceptor and CheW is still unclear. We used nuclear magnetic resonance to characterize the interaction modes of chemoreceptor and CheW from Thermotoga maritima. We find that chemoreceptor binding surface is located near the highly conserved tip region of the N-terminal helix of the receptor, whereas the binding interface of CheW is placed between the β-strand 8 of domain 1 and the β-strands 1 and 3 of domain 2. The receptor-CheW complex shares a similar binding interface to that found in the "trimer-of-dimers" oligomer interface seen in the crystal structure of cytoplasmic domains of chemoreceptors from Escherichia coli. Based on the association constants inferred from fast exchange chemical shifts associated with receptor-CheW titrations, we estimate that CheW binds about four times tighter to its first binding site of the receptor dimer than to its second binding site. This apparent anticooperativity in binding may reflect the close proximity of the two CheW binding surfaces near the receptor tip or further, complicating the events at this highly conserved region of the receptor. This work describes the first direct observation of the interaction between chemoreceptor and CheW.

[1]  O. W. Sørensen,et al.  Sequential HNCACB and CBCANH protein NMR pulse sequences. , 2001, Journal of magnetic resonance.

[2]  G. L. Hazelbauer,et al.  Core unit of chemotaxis signaling complexes , 2011, Proceedings of the National Academy of Sciences.

[3]  L. Kay,et al.  Improved lineshape and sensitivity in the HNCO-family of triple resonance experiments , 1999 .

[4]  F. Dahlquist,et al.  The contact interface of a 120 kD CheA-CheW complex by methyl TROSY interaction spectroscopy. , 2005, Journal of the American Chemical Society.

[5]  J. S. Parkinson,et al.  Different Signaling Roles of Two Conserved Residues in the Cytoplasmic Hairpin Tip of Tsr, the Escherichia coli Serine Chemoreceptor , 2008, Journal of bacteriology.

[6]  K Wüthrich,et al.  TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[7]  J. S. Parkinson,et al.  Role of CheW protein in coupling membrane receptors to the intracellular signaling system of bacterial chemotaxis. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[8]  Gabriela Gonzalez-Bonet,et al.  Reconstruction of the chemotaxis receptor–kinase assembly , 2006, Nature Structural &Molecular Biology.

[9]  Davi R. Ortega,et al.  Universal architecture of bacterial chemoreceptor arrays , 2009, Proceedings of the National Academy of Sciences.

[10]  J. S. Parkinson,et al.  Crosslinking snapshots of bacterial chemoreceptor squads , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[11]  B. Crane,et al.  The structure of a soluble chemoreceptor suggests a mechanism for propagating conformational signals. , 2009, Biochemistry.

[12]  S. Subramaniam,et al.  Direct visualization of Escherichia coli chemotaxis receptor arrays using cryo-electron microscopy , 2007, Proceedings of the National Academy of Sciences.

[13]  J. S. Parkinson,et al.  Collaborative signaling by mixed chemoreceptor teams in Escherichia coli , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[14]  G. L. Hazelbauer,et al.  Using Nanodiscs to create water-soluble transmembrane chemoreceptors inserted in lipid bilayers. , 2007, Methods in enzymology.

[15]  J. S. Parkinson,et al.  Bacterial chemoreceptors: high-performance signaling in networked arrays. , 2008, Trends in biochemical sciences.

[16]  G. Wider,et al.  Improved sensitivity and coherence selection for [15N,1H]-TROSY elements in triple resonance experiments , 1999, Journal of biomolecular NMR.

[17]  J. S. Parkinson,et al.  Genetic evidence for interaction between the CheW and Tsr proteins during chemoreceptor signaling by Escherichia coli , 1991, Journal of bacteriology.

[18]  F. Richards,et al.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. , 1992, Biochemistry.

[19]  Sung-Hou Kim,et al.  Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor , 1999, Nature.

[20]  Sriram Subramaniam,et al.  Chemotaxis kinase CheA is activated by three neighbouring chemoreceptor dimers as effectively as by receptor clusters , 2011, Molecular microbiology.

[21]  R. Stewart,et al.  CheA Kinase and Chemoreceptor Interaction Surfaces on CheW* , 2002, The Journal of Biological Chemistry.

[22]  J. S. Parkinson,et al.  Collaborative signaling by bacterial chemoreceptors. , 2005, Current opinion in microbiology.

[23]  J. Falke,et al.  Mapping out regions on the surface of the aspartate receptor that are essential for kinase activation. , 2003, Biochemistry.

[24]  Frederick W. Dahlquist,et al.  Assembly of an MCP receptor, CheW, and kinase CheA complex in the bacterial chemotaxis signal transduction pathway , 1992, Cell.

[25]  J. S. Parkinson,et al.  Insights into the organization and dynamics of bacterial chemoreceptor clusters through in vivo crosslinking studies , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[26]  F. Dahlquist,et al.  CheW Binding Interactions with CheA and Tar , 2002, The Journal of Biological Chemistry.

[27]  C. Jin,et al.  Solution structure of the bacterial chemotaxis adaptor protein CheW from Escherichia coli. , 2007, Biochemical and biophysical research communications.

[28]  L. Kay,et al.  An Isotope Labeling Strategy for Methyl TROSY Spectroscopy , 2004, Journal of biomolecular NMR.

[29]  M. Simon,et al.  The solution structure and interactions of CheW from Thermotoga maritima , 2002, Nature Structural Biology.

[30]  John S Parkinson,et al.  Disruption of chemoreceptor signalling arrays by high levels of CheW, the receptor–kinase coupling protein , 2010, Molecular microbiology.

[31]  A. Palmer,et al.  Transverse-relaxation-optimized (TROSY) gradient-enhanced triple-resonance NMR spectroscopy. , 1999, Journal of magnetic resonance.

[32]  Igor B. Zhulin,et al.  Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors , 2007, Proceedings of the National Academy of Sciences.

[33]  G. Wider,et al.  [13c]-Constant-Time [15n,1h]-Trosy-Hnca for Sequential Assignments of Large Proteins , 1999, Journal of biomolecular NMR.

[34]  K. Pervushin,et al.  Improved TROSY-HNCA experiment with suppression of conformational exchange induced relaxation , 2001, Journal of biomolecular NMR.