Bayesian Uncertainty Quantification for Data-Driven Applications in Engineering and Life Sciences
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[1] Guillermo Rus-Carlborg,et al. Approximate Bayesian Computation by Subset Simulation , 2014, SIAM J. Sci. Comput..
[2] M. Vakilzadeh,et al. Manifold Metropolis adjusted Langevin algorithm for high-dimensional Bayesian FE , 2014 .
[3] Pascal Pernot,et al. Calibration of forcefields for molecular simulation: Sequential design of computer experiments for building cost‐efficient kriging metamodels , 2014, J. Comput. Chem..
[4] F. Feroz,et al. MultiNest: an efficient and robust Bayesian inference tool for cosmology and particle physics , 2008, 0809.3437.
[5] Gerhard Gompper,et al. White blood cell margination in microcirculation. , 2014, Soft matter.
[6] Thomas L. Griffiths,et al. Neural Implementation of Hierarchical Bayesian Inference by Importance Sampling , 2009, NIPS.
[7] M Scott Shell,et al. The relative entropy is fundamental to multiscale and inverse thermodynamic problems. , 2008, The Journal of chemical physics.
[8] Chwee Teck Lim,et al. Connections between single-cell biomechanics and human disease states: gastrointestinal cancer and malaria. , 2005, Acta biomaterialia.
[9] Steve Plimpton,et al. Fast parallel algorithms for short-range molecular dynamics , 1993 .
[10] Christian P Robert,et al. Lack of confidence in approximate Bayesian computation model choice , 2011, Proceedings of the National Academy of Sciences.
[11] E. Evans. Bending elastic modulus of red blood cell membrane derived from buckling instability in micropipet aspiration tests. , 1983, Biophysical journal.
[12] George Em Karniadakis,et al. A multiscale red blood cell model with accurate mechanics, rheology, and dynamics. , 2010, Biophysical journal.
[13] Nikolaus Hansen,et al. Completely Derandomized Self-Adaptation in Evolution Strategies , 2001, Evolutionary Computation.
[14] J. A. Barker,et al. Liquid argon: Monte carlo and molecular dynamics calculations , 1971 .
[15] Pascal Pernot,et al. Statistical approaches to forcefield calibration and prediction uncertainty in molecular simulation. , 2011, The Journal of chemical physics.
[16] Kurt Kremer,et al. Multiscale simulation of soft matter systems. , 2010, Faraday discussions.
[17] J. Tenenbaum,et al. Bayesian Special Section Learning Overhypotheses with Hierarchical Bayesian Models , 2022 .
[18] Harald Kruggel-Emden,et al. A study on tangential force laws applicable to the discrete element method (DEM) for materials with viscoelastic or plastic behavior , 2008 .
[19] Brandon M. Turner,et al. Journal of Mathematical Psychology a Tutorial on Approximate Bayesian Computation , 2022 .
[20] Bo Qiu,et al. Quantifying Uncertainty in Multiscale Heat Conduction Calculations , 2012 .
[21] R. Wilkinson. Approximate Bayesian computation (ABC) gives exact results under the assumption of model error , 2008, Statistical applications in genetics and molecular biology.
[22] Costas Papadimitriou,et al. Exploiting Task-Based Parallelism in Bayesian Uncertainty Quantification , 2015, Euro-Par.
[23] Janet E. Jones. On the determination of molecular fields. III.—From crystal measurements and kinetic theory data , 1924 .
[24] Costas Papadimitriou,et al. Fusing heterogeneous data for the calibration of molecular dynamics force fields using hierarchical Bayesian models. , 2016, The Journal of chemical physics.
[25] E. Merrill,et al. Influence of flow properties of blood upon viscosity-hematocrit relationships. , 1962, The Journal of clinical investigation.
[26] J. Beck,et al. Updating Models and Their Uncertainties. I: Bayesian Statistical Framework , 1998 .
[27] P. Koumoutsakos,et al. X-TMCMC: Adaptive kriging for Bayesian inverse modeling , 2015 .
[28] Paul Marjoram,et al. Markov chain Monte Carlo without likelihoods , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[29] Charles J. Geyer,et al. Practical Markov Chain Monte Carlo , 1992 .
[30] M. Beaumont,et al. Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation , 2013, Heredity.
[31] R. Stephenson. A and V , 1962, The British journal of ophthalmology.
[32] M. Hobson,et al. Efficient Bayesian inference for multimodal problems in cosmology , 2007, astro-ph/0701867.
[33] Costas Papadimitriou,et al. Bayesian uncertainty quantification and propagation in molecular dynamics simulations: a high performance computing framework. , 2012, The Journal of chemical physics.
[34] Mark A. Girolami,et al. BioBayes: A software package for Bayesian inference in systems biology , 2008, Bioinform..
[35] L. Excoffier,et al. Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood , 2009, Genetics.
[36] V. Goder,et al. Molecular mechanism of signal sequence orientation in the endoplasmic reticulum , 2003, The EMBO journal.
[37] O. Cappé,et al. Population Monte Carlo , 2004 .
[38] Costas Papadimitriou,et al. Π4U: A high performance computing framework for Bayesian uncertainty quantification of complex models , 2015, J. Comput. Phys..
[39] F. Montel,et al. Molecular dynamics comparative study of Lennard-Jones -6 and exponential -6 potentials: application to real simple fluids (viscosity and pressure). , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.
[40] D. Boal,et al. Simulations of the erythrocyte cytoskeleton at large deformation. II. Micropipette aspiration. , 1998, Biophysical journal.
[41] J. Beck,et al. Bayesian Model Updating Using Hybrid Monte Carlo Simulation with Application to Structural Dynamic Models with Many Uncertain Parameters , 2009 .
[42] S. E. Ahmed,et al. Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference , 2008, Technometrics.
[43] D. Krige. A statistical approach to some basic mine valuation problems on the Witwatersrand, by D.G. Krige, published in the Journal, December 1951 : introduction by the author , 1951 .
[44] Magalie Faivre,et al. Swinging of red blood cells under shear flow. , 2007, Physical review letters.
[45] Radford M. Neal. Sampling from multimodal distributions using tempered transitions , 1996, Stat. Comput..
[46] S Wu,et al. A hierarchical Bayesian framework for force field selection in molecular dynamics simulations , 2016, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[47] Subra Suresh,et al. Lipid bilayer and cytoskeletal interactions in a red blood cell , 2013, Proceedings of the National Academy of Sciences.
[48] M. Stein. Statistical Interpolation of Spatial Data: Some Theory for Kriging , 1999 .
[49] Richard G. Everitt,et al. Likelihood-free estimation of model evidence , 2011 .
[50] Andrea Rau,et al. Reverse engineering gene regulatory networks using approximate Bayesian computation , 2012, Stat. Comput..
[51] Connie Y. Wang,et al. Structurally detailed coarse-grained model for Sec-facilitated co-translational protein translocation and membrane integration , 2017, PLoS Comput. Biol..
[52] A. Gelfand,et al. Bayesian Model Choice: Asymptotics and Exact Calculations , 1994 .
[53] J. Tinsley Oden,et al. Selection, calibration, and validation of coarse-grained models of atomistic systems , 2015 .
[54] Petros Koumoutsakos,et al. Reducing the Time Complexity of the Derandomized Evolution Strategy with Covariance Matrix Adaptation (CMA-ES) , 2003, Evolutionary Computation.
[55] Michael H. Moys,et al. Experimental study of oblique impacts with initial spin , 2006 .
[56] A. Rambaut,et al. BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.
[57] J. Koelman,et al. Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics , 1992 .
[58] Michael D Lee,et al. BayesSDT: Software for Bayesian inference with signal detection theory , 2008, Behavior research methods.
[59] L. Katafygiotis,et al. Tangential‐projection algorithm for manifold representation in unidentifiable model updating problems , 2002 .
[60] J. Kestin,et al. Equilibrium and transport properties of the noble gases and their mixtures at low density , 1984 .
[61] F. RIZZI,et al. Uncertainty Quantification in MD Simulations. Part I: Forward Propagation , 2012, Multiscale Model. Simul..
[62] R. Tran-Son-Tay,et al. Determination of red blood cell membrane viscosity from rheoscopic observations of tank-treading motion. , 1984, Biophysical journal.
[63] Duncan Temple Lang,et al. Programming With Models: Writing Statistical Algorithms for General Model Structures With NIMBLE , 2015, 1505.05093.
[64] Mark Girolami,et al. Statistical analysis of nonlinear dynamical systems using differential geometric sampling methods , 2011, Interface Focus.
[65] M. Socol,et al. Full dynamics of a red blood cell in shear flow , 2012, Proceedings of the National Academy of Sciences.
[66] J. A. White,et al. Lennard-Jones as a model for argon and test of extended renormalization group calculations , 1999 .
[67] W. K. Hastings,et al. Monte Carlo Sampling Methods Using Markov Chains and Their Applications , 1970 .
[68] M. Kalos,et al. Monte Carlo methods , 1986 .
[69] P. Peskun,et al. Optimum Monte-Carlo sampling using Markov chains , 1973 .
[70] Costas Papadimitriou,et al. Data driven, predictive molecular dynamics for nanoscale flow simulations under uncertainty. , 2013, The journal of physical chemistry. B.
[71] E. Merrill,et al. Rheology of human blood, near and at zero flow. Effects of temperature and hematocrit level. , 1963, Biophysical journal.
[72] T. Junne,et al. Orientation of internal signal-anchor sequences at the Sec61 translocon. , 2012, Journal of molecular biology.
[73] Costas Papadimitriou,et al. Bayesian uncertainty quantification and propagation for discrete element simulations of granular materials , 2014 .
[74] Gerhard Gompper,et al. Predicting human blood viscosity in silico , 2011, Proceedings of the National Academy of Sciences.
[75] Simon J. Godsill,et al. An Overview of Existing Methods and Recent Advances in Sequential Monte Carlo , 2007, Proceedings of the IEEE.
[76] J. Ching,et al. Transitional Markov Chain Monte Carlo Method for Bayesian Model Updating, Model Class Selection, and Model Averaging , 2007 .
[77] D. Nicholson,et al. Monte Carlo grand canonical ensemble calculation in a gas-liquid transition region for 12-6 Argon , 1975 .
[78] Jun Yu,et al. Bugs for a Bayesian Analysis of Stochastic Volatility Models , 2000 .
[79] Thomas M Fischer,et al. Tank-tread frequency of the red cell membrane: dependence on the viscosity of the suspending medium. , 2007, Biophysical journal.
[80] Steven J. Plimpton,et al. Peridynamics with LAMMPS : a user guide. , 2008 .
[81] S. V. Sciver. Special Topics in Helium Cryogenics , 2012 .
[82] Gordon Luikart,et al. Comparative Evaluation of a New Effective Population Size Estimator Based on Approximate Bayesian Computation , 2004, Genetics.
[83] M. Shiga,et al. Rapid estimation of elastic constants by molecular dynamics simulation under constant stress , 2004 .
[84] Dmitry A. Fedosov,et al. Multiscale Modeling of Blood Flow and Soft Matter , 2010 .
[85] Iason Papaioannou,et al. Transitional Markov Chain Monte Carlo: Observations and Improvements , 2016 .
[86] W. Gilks. Markov Chain Monte Carlo , 2005 .
[87] M. Beaumont. Approximate Bayesian Computation in Evolution and Ecology , 2010 .
[88] Lasting Contacts in Molecular Dynamics Simulations , 1998 .
[89] P. Moral,et al. Sequential Monte Carlo samplers , 2002, cond-mat/0212648.
[90] Ronald L. Graham,et al. Bounds on Multiprocessing Timing Anomalies , 1969, SIAM Journal of Applied Mathematics.
[91] Chee Kheong Siew,et al. Extreme learning machine: Theory and applications , 2006, Neurocomputing.
[92] K. Walters. Parameter estimation for an immortal model of colonic stem cell division using approximate Bayesian computation. , 2012, Journal of theoretical biology.
[93] Costas Papadimitriou,et al. Approximate Bayesian Computation for Granular and Molecular Dynamics Simulations , 2016, PASC.
[94] Andrew D. Martin,et al. MCMCpack: Markov chain Monte Carlo in R , 2011 .
[95] A. Gelman,et al. Stan , 2015 .
[96] Jukka Corander,et al. Approximate Bayesian Computation , 2013, PLoS Comput. Biol..
[97] Perry de Valpine,et al. An approximate Bayesian computation approach to parameter estimation in a stochastic stage-structured population model. , 2014, Ecology.
[98] M. Feldman,et al. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. , 1999, Molecular biology and evolution.
[99] Simon Haykin,et al. Neural Networks: A Comprehensive Foundation , 1998 .
[100] P. Español,et al. Statistical Mechanics of Dissipative Particle Dynamics. , 1995 .
[101] J. Beck,et al. Estimation of Small Failure Probabilities in High Dimensions by Subset Simulation , 2001 .
[102] E. Evans,et al. Molecular maps of red cell deformation: hidden elasticity and in situ connectivity. , 1994, Science.
[103] T. Fischer. On the energy dissipation in a tank-treading human red blood cell. , 1980, Biophysical journal.
[104] Iason Papaioannou,et al. Bayesian Updating with Structural Reliability Methods , 2015 .
[105] P. B. Warren,et al. DISSIPATIVE PARTICLE DYNAMICS : BRIDGING THE GAP BETWEEN ATOMISTIC AND MESOSCOPIC SIMULATION , 1997 .
[106] S. Suresh,et al. Spectrin-level modeling of the cytoskeleton and optical tweezers stretching of the erythrocyte. , 2005, Biophysical journal.
[107] Benjamin D. Redelings,et al. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny , 2006, Bioinform..
[108] Costas Papadimitriou,et al. Bayesian Annealed Sequential Importance Sampling: An Unbiased Version of Transitional Markov Chain Monte Carlo , 2018 .
[109] H Schmid-Schönbein,et al. The red cell as a fluid droplet: tank tread-like motion of the human erythrocyte membrane in shear flow. , 1978, Science.
[110] George Em Karniadakis,et al. Single-particle hydrodynamics in DPD: A new formulation , 2008 .
[111] George Em Karniadakis,et al. Accurate coarse-grained modeling of red blood cells. , 2008, Physical review letters.
[112] N. S. Gingrich,et al. The Diffraction of X-Rays by Argon in the Liquid, Vapor, and Critical Regions , 1942 .
[113] Aneesur Rahman,et al. Correlations in the Motion of Atoms in Liquid Argon , 1964 .
[114] Nenad Bićanić,et al. Discrete Element Methods , 2004 .