The wax gourd genomes offer insights into the genetic diversity and ancestral cucurbit karyotype
暂无分享,去创建一个
W. J. Lucas | Zhonghua Zhang | Sanwen Huang | Xiyin Wang | W. Lucas | Jinpeng Wang | Qian Zhou | B. Jiang | Jigao Yu | Jiaqing Yuan | Shaobo Luo | Dasen Xie | Xueyong Yang | Wenrui Liu | Yuanchao Xu | Xiaoming He | Q. Peng | Qing Li | Wu Huang
[1] B. Jiang,et al. Genetic analysis and QTL mapping of fruit-related traits in wax gourd (Benincasa hispida) , 2018, Euphytica.
[2] C. Taccioli,et al. Transposable Elements Activity is Positively Related to Rate of Speciation in Mammals , 2018, Journal of Molecular Evolution.
[3] D. R. Matute,et al. The Role of Transposable Elements in Speciation , 2018, Genes.
[4] T. Liu,et al. An Overlooked Paleotetraploidization in Cucurbitaceae , 2017, Molecular biology and evolution.
[5] Honghe Sun,et al. The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring‐spot virus resistance locus , 2017, The Plant journal : for cell and molecular biology.
[6] Fan Zhang,et al. Karyotype stability and unbiased fractionation in the paleo-allotetraploid Cucurbita genomes , 2017, bioRxiv.
[7] Y. Weng,et al. QTL mapping of domestication and diversifying selection related traits in round-fruited semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis) , 2017, Theoretical and Applied Genetics.
[8] A. Paterson,et al. Hierarchically Aligning 10 Legume Genomes Establishes a Family-Level Genomics Platform1[OPEN] , 2017, Plant Physiology.
[9] Jeffrey T Leek,et al. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown , 2016, Nature Protocols.
[10] I. Mayrose,et al. Whole-genome duplication as a key factor in crop domestication , 2016, Nature Plants.
[11] B. Jiang,et al. High-density genetic map construction and gene mapping of pericarp color in wax gourd using specific-locus amplified fragment (SLAF) sequencing , 2015, BMC Genomics.
[12] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[13] W. Gray,et al. SAUR Proteins as Effectors of Hormonal and Environmental Signals in Plant Growth. , 2015, Molecular plant.
[14] Z. Lippman,et al. A cascade of arabinosyltransferases controls shoot meristem size in tomato , 2015, Nature Genetics.
[15] Qian Wang,et al. Transcriptomic analysis reveals the roles of microtubule-related genes and transcription factors in fruit length regulation in cucumber (Cucumis sativus L.) , 2015, Scientific Reports.
[16] James C. Schnable,et al. ALLMAPS: robust scaffold ordering based on multiple maps , 2015, Genome Biology.
[17] Alexandros Stamatakis,et al. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies , 2014, Bioinform..
[18] Yan-li Liu,et al. New triterpenoids and other constituents from the fruits of Benincasa hispida (Thunb.) Cogn. , 2013, Journal of agricultural and food chemistry.
[19] Ying Li,et al. A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity , 2013, Nature Genetics.
[20] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[21] B. Jiang,et al. De Novo Assembly and Characterization of the Transcriptome, and Development of SSR Markers in Wax Gourd (Benicasa hispida) , 2013, PloS one.
[22] Mira V. Han,et al. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. , 2013, Molecular biology and evolution.
[23] Douglas G. Scofield,et al. The Norway spruce genome sequence and conifer genome evolution , 2013, Nature.
[24] G. Ji,et al. Extract of Wax Gourd Peel Prevents High-Fat Diet-Induced Hyperlipidemia in C57BL/6 Mice via the Inhibition of the PPARγ Pathway , 2013, Evidence-based complementary and alternative medicine : eCAM.
[25] W. J. Lucas,et al. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions , 2012, Nature Genetics.
[26] B. Jiang,et al. Characterization and chromosomal distribution of Ty3-gypsy-like retrotransposons in wax gourd (Benincasa hispida) , 2013 .
[27] R. Gibbs,et al. Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology , 2012, PloS one.
[28] R. Guigó,et al. The genome of melon (Cucumis melo L.) , 2012, Proceedings of the National Academy of Sciences.
[29] Stacey S. Cherny,et al. Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets , 2011, Human Genetics.
[30] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[31] S. Renner,et al. Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia , 2010, Proceedings of the National Academy of Sciences.
[32] H. Kang,et al. Variance component model to account for sample structure in genome-wide association studies , 2010, Nature Genetics.
[33] D. Presgraves,et al. The molecular evolutionary basis of species formation , 2010, Nature Reviews Genetics.
[34] David Reich,et al. Population differentiation as a test for selective sweeps. , 2010, Genome research.
[35] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[36] Asan,et al. The genome of the cucumber, Cucumis sativus L. , 2009, Nature Genetics.
[37] A. Meyer,et al. The evolutionary significance of ancient genome duplications , 2009, Nature Reviews Genetics.
[38] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[39] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[40] Robert D. Finn,et al. InterPro: the integrative protein signature database , 2008, Nucleic Acids Res..
[41] S. Renner,et al. Gourds afloat: a dated phylogeny reveals an Asian origin of the gourd family (Cucurbitaceae) and numerous oversea dispersal events , 2009, Proceedings of the Royal Society B: Biological Sciences.
[42] C. Nusbaum,et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. , 2008, Genome research.
[43] David Haussler,et al. Using native and syntenically mapped cDNA alignments to improve de novo gene finding , 2008, Bioinform..
[44] Jonathan E. Allen,et al. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments , 2007, Genome Biology.
[45] J. Poulain,et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla , 2007, Nature.
[46] Zhao Xu,et al. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons , 2007, Nucleic Acids Res..
[47] D. Reich,et al. Population Structure and Eigenanalysis , 2006, PLoS genetics.
[48] Zhe Li,et al. Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice , 2006, BMC Bioinformatics.
[49] Steven Salzberg,et al. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders , 2004, Bioinform..
[50] Ian Korf,et al. Gene finding in novel genomes , 2004, BMC Bioinformatics.
[51] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[52] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[53] P. Ranjekar,et al. Arrangement and size distribution of repeat and single copy DNA sequences in four species ofCucurbitaceae , 1986, Plant Systematics and Evolution.
[54] Stephen M. Mount,et al. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. , 2003, Nucleic acids research.
[55] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[56] M. Stephens,et al. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.
[57] J. Grover,et al. Extracts of Benincasa hispida prevent development of experimental ulcers. , 2001, Journal of ethnopharmacology.
[58] M. Lynch,et al. The evolutionary fate and consequences of duplicate genes. , 2000, Science.
[59] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[60] M. Nei,et al. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. , 1986, Molecular biology and evolution.
[61] F. Tajima. Evolutionary relationship of DNA sequences in finite populations. , 1983, Genetics.
[62] J. S. Heslop-Harrison,et al. Nuclear dna amounts in angiosperms. , 1976, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[63] W. F. Thompson,et al. Rapid isolation of high molecular weight plant DNA. , 1980, Nucleic acids research.