Is there replication-associated mutational pressure in the Saccharomyces cerevisiae genome?
暂无分享,去创建一个
S. Cebrat | M. Dudek | P. Mackiewicz | P Mackiewicz | M Kowalczuk | A Gierlik | M R Dudek | S Cebrat | M. Kowalczuk | A. Gierlik
[1] B. Tye,et al. Autonomously replicating sequences in Saccharomyces cerevisiae. , 1980, Proceedings of the National Academy of Sciences of the United States of America.
[2] D. A. Kreutzer,et al. Oxidized, deaminated cytosines are a source of C --> T transitions in vivo. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[3] S. Cebrat,et al. How does replication-associated mutational pressure influence amino acid composition of proteins? , 1999, Genome research.
[4] Gary J. Olsen,et al. Archaeal Genomics : An Overview Minireview , 1997 .
[5] DNA replication: one strand may be more equal. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[6] A. Grigoriev. Strand-specific compositional asymmetries in double-stranded DNA viruses. , 1999, Virus research.
[7] Temple F. Smith,et al. Patterns of Genome Organization in Bacteria , 1998, Science.
[8] E. Chargaff,et al. On the denaturation of deoxyribonucleic acid. , 1966, Biochimica et biophysica acta.
[9] R Zhang,et al. Analysis of distribution of bases in the coding sequences by a diagrammatic technique. , 1991, Nucleic acids research.
[10] J. Lobry,et al. Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms. , 1999, Gene.
[11] C. Sensen,et al. Complete DNA sequence of yeast chromosome XI , 1994, Nature.
[12] V. Zakian,et al. Sequencing of Saccharomyces telomeres cloned using T4 DNA polymerase reveals two domains , 1990, Molecular and cellular biology.
[13] S. Cebrat,et al. Asymmetry of coding versus noncoding strand in coding sequences of different genomes. , 1997, Microbial & comparative genomics.
[14] K. H. Wolfe,et al. Eukaryote genome duplication - where's the evidence? , 1998, Current opinion in genetics & development.
[15] E. Chargaff,et al. On the denaturation of deoxyribonucleic acid. II. Effects of concentration. , 1967, Biochimica et biophysica acta.
[16] A. Goffeau,et al. The complete genome sequence of the Gram-positive bacterium Bacillus subtilis , 1997, Nature.
[17] T. Sicheritz-Pontén,et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria , 1998, Nature.
[18] T. Lindahl. Instability and decay of the primary structure of DNA , 1993, Nature.
[19] G. Obe. Advances in Mutagenesis Research , 2011, Advances in Mutagenesis Research.
[20] Chung-I Wu,et al. Inequality in mutation rates of the two strands of DNA , 1987, Nature.
[21] Jack W. Szostak,et al. DNA sequences of telomeres maintained in yeast , 1984, Nature.
[22] C. Newlon,et al. A replication map of a 61-kb circular derivative of Saccharomyces cerevisiae chromosome III. , 1992, Molecular biology of the cell.
[23] K. Marians. Prokaryotic DNA replication. , 1992, Annual review of biochemistry.
[24] J. Lobry. Asymmetric substitution patterns in the two DNA strands of bacteria. , 1996, Molecular biology and evolution.
[25] J. Lobry,et al. Origin of Replication of Mycoplasma genitalium , 1996, Science.
[26] E J Louis,et al. The subtelomeric Y' repeat family in Saccharomyces cerevisiae: an experimental system for repeated sequence evolution. , 1990, Genetics.
[27] Hans-Werner Mewes,et al. the yeast genome , 1997 .
[28] S. Salzberg,et al. Complete genome sequence of Treponema pallidum, the syphilis spirochete. , 1998, Science.
[29] H. Ochman,et al. Asymmetries Generated by Transcription-Coupled Repair in Enterobacterial Genes , 1996, Science.
[30] S. Cebrat,et al. The effect of DNA phase structure on DNA walks , 1998 .
[31] R. Sinden,et al. Differential DNA secondary structure-mediated deletion mutation in the leading and lagging strands , 1995, Journal of bacteriology.
[32] J. Filipski. Evolution of DNA Sequence Contributions of Mutational Bias and Selection to the Origin of Chromosomal Compartments , 1990 .
[33] S. Cebrat,et al. Asymmetry of nucleotide composition of prokaryotic chromosomes , 1999 .
[34] P. Hanawalt. Heterogeneity of DNA repair at the gene level. , 1991, Mutation research.
[35] C. Newlon,et al. The effect on chromosome stability of deleting replication origins , 1993, Molecular and cellular biology.
[36] B. Stillman,et al. Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro , 1994, Nature.
[37] H. Echols,et al. Fidelity mechanisms in DNA replication. , 1991, Annual review of biochemistry.
[38] Paweł Mackiewicz,et al. Effect of replication on the third base of codons , 1999 .
[39] P. Sharp,et al. Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases. , 1999, Nucleic acids research.
[40] S. Salzberg,et al. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi , 1997, Nature.
[41] C. Newlon,et al. The ARS consensus sequence is required for chromosomal origin function in Saccharomyces cerevisiae , 1992, Molecular and cellular biology.
[42] B. Wilkins. Organization and plasticity of enterobacterial genomes. , 1988, Society for Applied Bacteriology symposium series.
[43] J. Wang. The base contents of A, C, G or U for the three codon positions and the total coding sequences show positive correlation. , 1998, Journal of biomolecular structure & dynamics.
[44] T. Kunkel. Biological asymmetries and the fidelity of eukaryotic DNA replication , 1992, BioEssays : news and reviews in molecular, cellular and developmental biology.
[45] S. Karlin,et al. Comparative DNA analysis across diverse genomes. , 1998, Annual review of genetics.
[46] F. Sanger,et al. Features of Bacteriophage λ: Analysis of the Complete Nucleotide Sequence , 1983 .
[47] R. Schaaper,et al. Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[48] A Grigoriev,et al. Analyzing genomes with cumulative skew diagrams. , 1998, Nucleic acids research.
[49] K. H. Wolfe,et al. Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi , 1998, Yeast.
[50] P. Slonimski,et al. Two yeast chromosomes are related by a fossil duplication of their centromeric regions. , 1993, Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie.
[51] A. Bhagwat,et al. Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[52] T. Kunkel,et al. A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy. , 1990, Biochemistry.
[53] A. Danchin,et al. Universal replication biases in bacteria , 1999, Molecular microbiology.
[54] R. Fuchs,et al. Greater susceptibility to mutations in lagging strand of DNA replication in Escherichia coli than in leading strand , 1993 .
[55] S. Salzberg,et al. Skewed oligomers and origins of replication. , 1998, Gene.
[56] S. Cebrat,et al. Origin and properties of non-coding ORFs in the yeast genome. , 1999, Nucleic acids research.
[57] S. Karlin,et al. Dinucleotide relative abundance extremes: a genomic signature. , 1995, Trends in genetics : TIG.
[58] C. Newlon,et al. Evidence suggesting that the ARS elements associated with silencers of the yeast mating-type locus HML do not function as chromosomal DNA replication origins , 1991, Molecular and cellular biology.
[59] H. Ochman,et al. Strand asymmetries in DNA evolution. , 1997, Trends in genetics : TIG.
[60] Gary J Olsen,et al. Archaeal Genomics: An Overview , 1997, Cell.
[61] K. H. Wolfe,et al. Molecular evidence for an ancient duplication of the entire yeast genome , 1997, Nature.
[62] K. H. Wolfe,et al. Base Composition Skews, Replication Orientation, and Gene Orientation in 12 Prokaryote Genomes , 1998, Journal of Molecular Evolution.
[63] A. Goffeau,et al. Yeast genome , 1995 .
[64] R. Britten. Precise sequence complementarity between yeast chromosome ends and two classes of just-subtelomeric sequences. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[65] S. Karlin,et al. Strand compositional asymmetry in bacterial and large viral genomes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[66] J O McInerney,et al. Replicational and transcriptional selection on codon usage in Borrelia burgdorferi. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[67] H Philippe,et al. Identification of putative chromosomal origins of replication in Archaea , 1999, Molecular microbiology.
[68] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[69] André Goffeau,et al. The yeast genome directory. , 1997, Nature.
[70] K. H. Wolfe,et al. Extent of genomic rearrangement after genome duplication in yeast. , 1998, Proceedings of the National Academy of Sciences of the United States of America.