3D Texture Analysis in Renal Cell Carcinoma Tissue Image Grading

One of the most significant processes in cancer cell and tissue image analysis is the efficient extraction of features for grading purposes. This research applied two types of three-dimensional texture analysis methods to the extraction of feature values from renal cell carcinoma tissue images, and then evaluated the validity of the methods statistically through grade classification. First, we used a confocal laser scanning microscope to obtain image slices of four grades of renal cell carcinoma, which were then reconstructed into 3D volumes. Next, we extracted quantitative values using a 3D gray level cooccurrence matrix (GLCM) and a 3D wavelet based on two types of basis functions. To evaluate their validity, we predefined 6 different statistical classifiers and applied these to the extracted feature sets. In the grade classification results, 3D Haar wavelet texture features combined with principal component analysis showed the best discrimination results. Classification using 3D wavelet texture features was significantly better than 3D GLCM, suggesting that the former has potential for use in a computer-based grading system.

[1]  Jacob D. Furst,et al.  CO-OCCURRENCE MATRICES FOR VOLUMETRIC DATA , 2004 .

[2]  Chi-Man Pun,et al.  Log-Polar Wavelet Energy Signatures for Rotation and Scale Invariant Texture Classification , 2003, IEEE Trans. Pattern Anal. Mach. Intell..

[3]  André Huisman,et al.  Development of 3D Chromatin Texture Analysis Using Confocal Laser Scanning Microscopy , 2005, Cellular oncology : the official journal of the International Society for Cellular Oncology.

[4]  Heung-Kook Choi,et al.  Multi-Resolution Wavelet-Transformed Image Analysis of Histological Sections of Breast Carcinomas , 2005, Cellular oncology : the official journal of the International Society for Cellular Oncology.

[5]  E. Dougherty,et al.  Gray-scale morphological granulometric texture classification , 1994 .

[6]  Byung-Doo Kwon,et al.  A Comparative Study of 3D DWT Based Space-borne Image Classification for Differnet Types of Basis Function , 2008 .

[7]  Tutut Herawan,et al.  Computational and mathematical methods in medicine. , 2006, Computational and mathematical methods in medicine.

[8]  Rama Chellappa,et al.  Unsupervised Texture Segmentation Using Markov Random Field Models , 1991, IEEE Trans. Pattern Anal. Mach. Intell..

[9]  C. Lichtig,et al.  Prognostic significance of granular cell content in renal cell carcinoma. , 1992, European urology.

[10]  Maria Petrou,et al.  Texture anisotropy in 3-D images , 1999, IEEE Trans. Image Process..

[11]  Heung-Kook Choi,et al.  Grading of renal cell carcinoma by 3D morphological analysis of cell nuclei , 2007, Comput. Biol. Medicine.

[12]  Engin Avci,et al.  Comparison of wavelet families for texture classification by using wavelet packet entropy adaptive network based fuzzy inference system , 2008, Appl. Soft Comput..

[13]  D. Carter TNM Classification of Malignant Tumors , 1998 .

[14]  M.,et al.  Statistical and Structural Approaches to Texture , 2022 .

[15]  M Desco,et al.  Automatic quantification of viability in epithelial cell cultures by texture analysis , 2003, Journal of microscopy.

[16]  R. Colvin,et al.  Diagnosis and management of renal cell carcinoma A clinical and pathologic study of 309 cases , 1971, Cancer.

[17]  Charles E. Heckler,et al.  Applied Multivariate Statistical Analysis , 2005, Technometrics.

[18]  Ruola Ning,et al.  Breast volume denoising and noise characterization by 3D wavelet transform. , 2004, Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society.

[19]  K. Furge,et al.  Gene expression profiling of clear cell renal cell carcinoma: Gene identification and prognostic classification , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[20]  Roberto Manduchi,et al.  Bilateral filtering for gray and color images , 1998, Sixth International Conference on Computer Vision (IEEE Cat. No.98CH36271).

[21]  Marcus Bloice,et al.  Computer-aided diagnosis of melanocytic skin tumors by use of confocal laser scanning microscopy images. , 2011, Analytical and quantitative cytology and histology.

[22]  G. Moberger,et al.  Classification of bladder tumours based on the cellular pattern. Preliminary report of a clinical-pathological study of 300 cases with a minimum follow-up of eight years. , 1965, Acta chirurgica Scandinavica.

[23]  Heung-Kook Choi,et al.  Three-dimensional visualization and quantitative analysis of cervical cell nuclei with confocal laser scanning microscopy. , 2005, Analytical and quantitative cytology and histology.

[24]  Xiaohong W. Gao,et al.  TEXTURE-BASED 3D IMAGE RETRIEVAL FOR MEDICAL APPLICATIONS , 2010 .

[25]  H. K. Choi,et al.  Three-dimensional Texture Analysis of Renal Cell Carcinoma Cell Nuclei for Computerized Automatic Grading , 2010, Journal of Medical Systems.

[26]  Ewert Bengtsson,et al.  A Feature Set for Cytometry on Digitized Microscopic Images , 2003, Analytical cellular pathology : the journal of the European Society for Analytical Cellular Pathology.

[27]  B Weyn,et al.  Automated breast tumor diagnosis and grading based on wavelet chromatin texture description. , 1998, Cytometry.

[28]  Danny Barash,et al.  Bilateral Filtering and Anisotropic Diffusion: Towards a Unified Viewpoint , 2001, Scale-Space.

[29]  Fritz Albregtsen,et al.  A Review of Caveats in Statistical Nuclear Image Analysis , 1998, Analytical cellular pathology : the journal of the European Society for Analytical Cellular Pathology.

[30]  Gabriele A. Losa,et al.  Nuclear patterns of human breast cancer cells during apoptosis: characterisation by fractal dimension and co-occurrence matrix statistics , 2005, Cell and Tissue Research.

[31]  Nicu Sebe,et al.  Wavelet based texture classification , 2000, Proceedings 15th International Conference on Pattern Recognition. ICPR-2000.

[32]  F. Erdoğan,et al.  Prognostic significance of morphologic parameters in renal cell carcinoma , 2004, International journal of clinical practice.

[33]  Lucia Dettori,et al.  A comparison of wavelet, ridgelet, and curvelet-based texture classification algorithms in computed tomography , 2007, Comput. Biol. Medicine.