Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity
暂无分享,去创建一个
Björn Olsson | Jonas Gamalielsson | David W. Corne | Zelmina Lubovac | D. Corne | Zelmina Lubovac | Jonas Gamalielsson | B. Olsson
[1] Stefan Wuchty,et al. Peeling the yeast protein network , 2005, Proteomics.
[2] Björn Olsson,et al. Weighted Clustering Coefficient for Identifying Modular Formations in Protein-Protein Interaction Networks , 2008 .
[3] J. F. Poyatos,et al. How biologically relevant are interaction-based modules in protein networks? , 2004, Genome Biology.
[4] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[5] Kara Dolinski,et al. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO) , 2002, Nucleic Acids Res..
[6] Carole A. Goble,et al. Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation , 2003, Bioinform..
[7] A. Barabasi,et al. Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.
[8] Sarah A Teichmann,et al. The origins and evolution of functional modules: lessons from protein complexes , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[9] R. Parker,et al. Functions of Lsm proteins in mRNA degradation and splicing. , 2000, Current opinion in cell biology.
[10] Wim Van Criekinge,et al. Yeast Two-Hybrid: State of the Art , 1999, Biological Procedures Online.
[11] L. Lehle,et al. The Oligosaccharyltransferase Complex from Saccharomyces cerevisiae , 1999, The Journal of Biological Chemistry.
[12] Albert-László Barabási,et al. Life's Complexity Pyramid , 2002, Science.
[13] Edda Klipp,et al. Systems Biology , 1994 .
[14] R. Ozawa,et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[15] A. Barabasi,et al. Functional and topological characterization of protein interaction networks , 2004, Proteomics.
[16] Dekang Lin,et al. An Information-Theoretic Definition of Similarity , 1998, ICML.
[17] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[18] D. Thieffry,et al. Modularity in development and evolution. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[19] J. Blake,et al. Creating the Gene Ontology Resource : Design and Implementation The Gene Ontology Consortium 2 , 2001 .
[20] Zelmina Lubovac,et al. Combining functional and topological properties to identify core modules in protein interaction networks , 2006, Proteins.
[21] Ioannis Xenarios,et al. DIP: the Database of Interacting Proteins , 2000, Nucleic Acids Res..
[22] Carole A. Goble,et al. Semantic Similarity Measures as Tools for Exploring the Gene Ontology , 2002, Pacific Symposium on Biocomputing.
[23] Gary D Bader,et al. A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules , 2001, Science.
[24] Gary D. Bader,et al. An automated method for finding molecular complexes in large protein interaction networks , 2003, BMC Bioinformatics.
[25] C. Deane,et al. Protein Interactions , 2002, Molecular & Cellular Proteomics.
[26] L. Mirny,et al. Protein complexes and functional modules in molecular networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[27] Feng Luo,et al. Detecting Functional Modules from Protein Interaction Networks , 2006, First International Multi-Symposiums on Computer and Computational Sciences (IMSCCS'06).
[28] A. Vespignani,et al. The architecture of complex weighted networks. , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[29] Björn Olsson,et al. Combining topological characteristics and domain knowledge reveals functional modules in protein interaction networks , 2005 .
[30] A. Barabasi,et al. Weighted evolving networks. , 2001, Physical review letters.
[31] M. Mendenhall,et al. Regulation of Cdc28 Cyclin-Dependent Protein Kinase Activity during the Cell Cycle of the Yeast Saccharomyces cerevisiae , 1998, Microbiology and Molecular Biology Reviews.
[32] Igor Jurisica,et al. Functional topology in a network of protein interactions , 2004, Bioinform..
[33] Alexander Rives,et al. Modular organization of cellular networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.