A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
暂无分享,去创建一个
Yan Guo | Rob Knight | Jessica L. Metcalf | Laura Wegener Parfrey | Antonio Gonzalez | Christian L. Lauber | Dan Knights | Gail Ackermann | Gregory Humphrey | Matthew J. Gebert | Will Van Treuren | Donna Berg-Lyons | Kyle G. Keepers | James Bullard | Noah Fierer | David O. Carter | Rob Knight | Noah Fierer | Gail Ackermann | J. Metcalf | William W. Van Treuren | R. Knight | N. Fierer | C. Lauber | Donna Berg-Lyons | Antonio Gonzalez | D. Knights | G. Ackermann | G. Humphrey | K. Keepers | Laura Wegener Parfrey | D. Carter | Yan Guo | James Bullard | Gregory Humphrey | James Bullard
[1] W. Ludwig,et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.
[2] A. Jonas,et al. The Chemistry of Death , 1964, The Yale Journal of Biology and Medicine.
[3] M. Félix,et al. Oscheius tipulae, a widespread hermaphroditic soil nematode, displays a higher genetic diversity and geographical structure than Caenorhabditis elegans , 2008, Molecular ecology.
[4] Susan M. Huse,et al. A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes , 2009, PloS one.
[5] R H Dainty,et al. Symposium on microbial changes in foods. Changes caused by microbes in spoilage of meats. , 1971, The Journal of applied bacteriology.
[6] Leo Breiman,et al. Random Forests , 2001, Machine Learning.
[7] Se Jin Song,et al. Cohabiting family members share microbiota with one another and with their dogs , 2013, eLife.
[8] M. Elgar,et al. Yearly activity patterns in southern Victoria (Australia) of seasonally active carrion insects. , 2003, Forensic science international.
[9] Bernard Henrissat,et al. Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils , 2009, Applied and Environmental Microbiology.
[10] David O. Carter,et al. The biochemical alteration of soil beneath a decomposing carcass. , 2008, Forensic science international.
[11] Carlo P. Campobasso,et al. Best practice in forensic entomology—standards and guidelines , 2007, International Journal of Legal Medicine.
[12] M. Aragno,et al. Phylogenetic diversity of bacterial communities differing in degree of proximity of Lolium perenne and Trifolium repens roots , 1999 .
[13] S. Jarman,et al. Blocking primers to enhance PCR amplification of rare sequences in mixed samples – a case study on prey DNA in Antarctic krill stomachs , 2008, Frontiers in Zoology.
[14] J. Tomberlin,et al. A roadmap for bridging basic and applied research in forensic entomology. , 2011, Annual review of entomology.
[15] Rob Knight,et al. PyNAST: a flexible tool for aligning sequences to a template alignment , 2009, Bioinform..
[16] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[17] Nicholas A. Bokulich,et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing , 2012, Nature Methods.
[18] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[19] Eric P. Nawrocki,et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea , 2011, The ISME Journal.
[20] William A. Walters,et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample , 2010, Proceedings of the National Academy of Sciences.
[21] R. Knight,et al. Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale , 2009, Applied and Environmental Microbiology.
[22] Denis Krompass,et al. Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood , 2011, Systematic biology.
[23] M. Battán Horenstein,et al. Decomposition and dipteran succession in pig carrion in central Argentina: ecological aspects and their importance in forensic science , 2010, Medical and veterinary entomology.
[24] W M Bass,et al. Time since death determinations of human cadavers using soil solution. , 1992, Journal of forensic sciences.
[25] E. Smit,et al. Diversity and Seasonal Fluctuations of the Dominant Members of the Bacterial Soil Community in a Wheat Field as Determined by Cultivation and Molecular Methods , 2001, Applied and Environmental Microbiology.
[26] Andy Liaw,et al. Classification and Regression by randomForest , 2007 .
[27] David O. Carter,et al. Moisture can be the dominant environmental parameter governing cadaver decomposition in soil. , 2010, Forensic science international.
[28] J. Corry. A review. Possible sources of ethanol ante- and post-mortem: its relationship to the biochemistry and microbiology of decomposition. , 1978, The Journal of applied bacteriology.
[29] M. L. Goff,et al. Arthropod succession in exposed carrion in a tropical rainforest on O'ahu Island, Hawai'i. , 1987, Journal of medical entomology.
[30] W. E. D. Evans,et al. The chemistry of death , 1963 .
[31] Jesse R. Zaneveld,et al. Human-associated microbial signatures: examining their predictive value. , 2011, Cell host & microbe.
[32] Mary S Megyesi,et al. Using accumulated degree-days to estimate the postmortem interval from decomposed human remains. , 2005, Journal of forensic sciences.
[33] Meagan B. Gallagher,et al. Variation in Developmental Time for Geographically Distinct Populations of the Common Green Bottle Fly, Lucilia sericata (Meigen) * , 2010, Journal of forensic sciences.
[34] David O. Carter,et al. Cadaver decomposition in terrestrial ecosystems , 2006, Naturwissenschaften.
[35] J. Koehler,et al. The Coming Paradigm Shift in Forensic Identification Science , 2005, Science.
[36] David O. Carter,et al. Soil Analysis in Forensic Taphonomy : Chemical and Biological Effects of Buried Human Remains , 2008 .
[37] A. M. Tarone,et al. The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing , 2013, International Journal of Legal Medicine.
[38] D. Hopkins. The Role of Soil Organisms in Terrestrial Decomposition , 2008 .
[39] Arpad A. Vass,et al. Microbial Community Analysis of Human Decomposition on Soil , 2009 .
[40] T. Schmidt,et al. rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria , 2000, Applied and Environmental Microbiology.
[41] C. Schadt,et al. Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers , 2009, Applied and Environmental Microbiology.
[42] David O. Carter,et al. Temperature affects microbial decomposition of cadavers (Rattus rattus) in contrasting soils , 2008 .
[43] R. Knight,et al. Bacterial Community Variation in Human Body Habitats Across Space and Time , 2009, Science.
[44] David O. Carter,et al. Seasonal Variation of Carcass Decomposition and Gravesoil Chemistry in a Cold (Dfa) Climate , 2013, Journal of forensic sciences.
[45] A. Paululat,et al. Muscle formation during embryogenesis of the polychaete Ophryotrocha diadema (Dorvilleidae) – new insights into annelid muscle patterns , 2008, Frontiers in Zoology.
[46] James R. Cole,et al. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis , 2008, Nucleic Acids Res..
[47] R. B. Jackson,et al. Toward an ecological classification of soil bacteria. , 2007, Ecology.
[48] Paramvir S. Dehal,et al. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.
[49] David O. Carter,et al. Potential carcass enrichment of the University of Tennessee Anthropology Research Facility: a baseline survey of edaphic features. , 2012, Forensic science international.
[50] S. Edberg,et al. Advances in the bacteriology of the coliform group: their suitability as markers of microbial water safety. , 2001, Annual review of microbiology.
[51] L. Dawson,et al. Criminal and Environmental Soil Forensics , 2009 .