Radiative decay engineering: the role of photonic mode density in biotechnology.

Fluorescence detection is a central technology in biological research and biotechnology. A vast array of fluorescent probes are available with diverse spectral properties. These properties were 'engineered' into fluorophores by modification of the chemical structures. Essentially, all present uses of fluorescence rely on the radiation of energy into optically transparent media, the free space which surrounds the fluorophores. In this paper, we summarize an opportunity for novel fluorescence technology based on modification of the photonic mode density around the fluorophore and thus control of its spectral properties. This modification can be accomplished by proximity of fluorophores to metallic particles of gold, silver and possibly others. By engineering the size and shape of the metal particles, and the location of the fluorophores relative to the surfaces, fluorophores can be quenched, display increases in quantum yield, and changes in lifetime. Fluorophore-metal surface combinations can even display directional rather than isotropic emission. We describe recent experimental results and suggest potential biomedical applications of fluorophore-metal particle interactions.

[1]  Seth R. Marder,et al.  Five Orders-of-Magnitude Enhancement of Two-Photon Absorption for Dyes on Silver Nanoparticle Fractal Clusters , 2002 .

[2]  J. Lakowicz,et al.  Radiative decay engineering. 2. Effects of Silver Island films on fluorescence intensity, lifetimes, and resonance energy transfer. , 2002, Analytical biochemistry.

[3]  R. Thompson Red and Near-Infrared Fluorometry , 2002 .

[4]  W. Barnes,et al.  Fluorescence near interfaces: The role of photonic mode density , 1998 .

[5]  J. Lakowicz Principles of fluorescence spectroscopy , 1983 .

[6]  B. Meer,et al.  Resonance Energy Transfer: Theory and Data , 1994 .

[7]  W. Barnes,et al.  MODIFICATION OF SPONTANEOUS EMISSION LIFETIMES IN THE PRESENCE OF CORRUGATED METALLIC SURFACES , 1999 .

[8]  P. K. Aravind,et al.  Angular resonances in the emission from a dipole located near a grating , 1981 .

[9]  William L. Barnes,et al.  Modification of the spontaneous emission rate of Eu 3+ ions close to a thin metal mirror , 1997 .

[10]  Richard A. Keller,et al.  Molecular Shot Noise, Burst Size Distribution, and Single-Molecule Detection in Fluid Flow: Effects of Multiple Occupancy , 1998 .

[11]  Franz R. Aussenegg,et al.  Enhanced dye fluorescence over silver island films: analysis of the distance dependence , 1993 .

[12]  B Shen,et al.  Intrinsic fluorescence from DNA can be enhanced by metallic particles. , 2001, Biochemical and biophysical research communications.

[13]  Alan Van Orden,et al.  Single-molecule identification in flowing sample streams by fluorescence burst size and intraburst fluorescence decay rate. , 1998, Analytical chemistry.

[14]  Wolfgang Knoll,et al.  Surface-Plasmon Field-Enhanced Fluorescence Spectroscopy , 2000 .

[15]  E Pennisi,et al.  The Human Genome , 2001, Science.

[16]  W H Weber,et al.  Energy transfer from an excited dye molecule to the surface plasmons of an adjacent metal. , 1979, Optics letters.

[17]  H A Macleod,et al.  Surface plasmon resonance spectroscopy as a tool for investigating the biochemical and biophysical properties of membrane protein systems. I: Theoretical principles. , 1997, Biochimica et biophysica acta.

[18]  J. Lakowicz,et al.  Fluorescence spectral properties of cyanine dye-labeled DNA oligomers on surfaces coated with silver particles. , 2003, Analytical biochemistry.

[19]  Peer Bork,et al.  The draft sequences: Filling in the gaps , 2001, Nature.

[20]  A. Nitzan,et al.  Accelerated energy transfer between molecules near a solid particle , 1984 .

[21]  G. Sermonti The human genome. , 1988, Rivista di biologia.

[22]  W. Barnes,et al.  Spontaneous emission within metal-clad microcavities , 1999 .

[23]  S. Georghiou INTERACTION OF ACRIDINE DRUGS WITH DNA AND NUCLEOTIDES , 1977, Photochemistry and photobiology.

[24]  Lloyd M. Smith,et al.  Fluorescence detection in automated DNA sequence analysis , 1986, Nature.

[25]  S. John,et al.  Coherent control of spontaneous emission near a photonic band edge: A qubit for quantum computation , 1999 .

[26]  Stefan W. Hell,et al.  Two New High-Resolution Confocal Fluorescence Microscopies-(4Pi, Theta) with One- and Two-Photon Excitation , 1995 .

[27]  R. Mahrt,et al.  ENHANCED DIPOLE-DIPOLE INTERACTION IN A POLYMER MICROCAVITY , 1999 .

[28]  T. D. Bradrick,et al.  Large-amplitude picosecond anisotropy decay of the intrinsic fluorescence of double-stranded DNA. , 1996, Biophysical journal.

[29]  Robert E. Benner,et al.  Angular emission profiles of dye molecules excited by surface plasmon waves at a metal surface , 1979 .

[30]  Brahim Lounis,et al.  Photothermal Imaging of Nanometer-Sized Metal Particles Among Scatterers , 2002, Science.

[31]  S. R. Parker,et al.  Cyanine dye labeling reagents--carboxymethylindocyanine succinimidyl esters. , 1990, Cytometry.

[32]  Richard P. Haugland,et al.  Handbook of fluorescent probes and research chemicals , 1996 .

[33]  A. Nitzan,et al.  Spectroscopic properties of molecules interacting with small dielectric particles , 1981 .

[34]  J. Yguerabide,et al.  Light-scattering submicroscopic particles as highly fluorescent analogs and their use as tracer labels in clinical and biological applications. , 1998, Analytical biochemistry.

[35]  Kinam Park,et al.  Topics in Fluorescence Spectroscopy, Vol. 4. Probe Design and Chemical Sensing. , 1996 .

[36]  Clement E. Furlong,et al.  A commercial solution for surface plasmon sensing , 1996 .

[37]  William L. Barnes,et al.  Photoluminescence from dye molecules on silver gratings , 1996 .

[38]  T. Nordlund,et al.  PICOSECOND FLUORESCENCE DECAY TIME MEASUREMENTS OF NUCLEIC ACIDS AT ROOM TEMPERATURE IN AQUEOUS SOLUTION , 1985 .

[39]  Ignacy Gryczynski,et al.  Release of the self-quenching of fluorescence near silver metallic surfaces. , 2003, Analytical biochemistry.

[40]  S. P. Fodor,et al.  High density synthetic oligonucleotide arrays , 1999, Nature Genetics.

[41]  W. Webb,et al.  Multiphoton Excitation of Molecular Fluorophores and Nonlinear Laser Microscopy , 2002 .

[42]  Ignacy Gryczynski,et al.  Increased resonance energy transfer between fluorophores bound to DNA in proximity to metallic silver particles. , 2003, Analytical biochemistry.

[43]  Zygmunt Gryczynski,et al.  Effects of fluorophore-to-silver distance on the emission of cyanine-dye-labeled oligonucleotides. , 2003, Analytical biochemistry.

[44]  C. Foss,et al.  Metal Nanoparticles: Synthesis, Characterization, and Applications , 2001 .

[45]  Joseph R. Lakowicz,et al.  2. Effects of Silver Island Films on Fluorescence Intensity, Lifetimes, and Resonance Energy Transfer , 2002 .

[46]  H. Chew Transition rates of atoms near spherical surfaces , 1987 .

[47]  J. Attridge,et al.  Sensitivity enhancement of optical immunosensors by the use of a surface plasmon resonance fluoroimmunoassay. , 1991, Biosensors & bioelectronics.

[48]  Zheng,et al.  Resonant dipole-dipole interaction in a cavity. , 1995, Physical review. A, Atomic, molecular, and optical physics.

[49]  Genack,et al.  Suppression of molecular interactions in periodic dielectric structures. , 1988, Physical review letters.

[50]  Th. Förster Zwischenmolekulare Energiewanderung und Fluoreszenz , 1948 .

[51]  C. R. Berry,et al.  Effect of Particle Shape on the Spectral Absorption of Colloidal Silver in Gelatin , 1968 .

[52]  J. M. Prober,et al.  A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides. , 1987, Science.

[53]  T. Cotton,et al.  Chemical procedure for preparing surface-enhanced Raman scattering active silver films. , 1986, Analytical chemistry.

[54]  A. W. Czarnik,et al.  Fluorescent chemosensors for ion and molecule recognition , 1993 .

[55]  R. Steiner,et al.  Fluorescent Dye—Nucleic Acid Complexes , 1983 .

[56]  Joseph R. Lakowicz,et al.  Multiphoton Excitation of Fluorescence near Metallic Particles: Enhanced and Localized Excitation. , 2002, The journal of physical chemistry. B.

[57]  D. Weitz,et al.  The enhancement of Raman scattering, resonance Raman scattering, and fluorescence from molecules adsorbed on a rough silver surface , 1983 .

[58]  I. Petkova,et al.  Homodimeric monomethine cyanine dyes as fluorescent probes of biopolymers. , 2000, Journal of photochemistry and photobiology. B, Biology.

[59]  S. J. Strickler,et al.  Relationship between Absorption Intensity and Fluorescence Lifetime of Molecules , 1962 .

[60]  B. Valeur,et al.  Molecular Fluorescence: Principles and Applications , 2001 .

[61]  Abraham Nitzan,et al.  Theory of energy transfer between molecules near solid state particles , 1985 .

[62]  J. Hupp,et al.  Nonlinear Optical Properties of Metal Nanoparticles , 2001 .

[63]  W. Barnes,et al.  Förster energy transfer in an optical microcavity. , 2000, Science.