The importance of geometry in mathematical models of developing systems.
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[1] Robert Dillon,et al. Short- and long-range effects of Sonic hedgehog in limb development , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[2] David M. Umulis,et al. Robust, bistable patterning of the dorsal surface of the Drosophila embryo. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[3] Charless C. Fowlkes,et al. Analysis of Gap Gene Regulation in a 3D Organism-Scale Model of the Drosophila melanogaster Embryo , 2011, PloS one.
[4] J. Sharpe,et al. 4D retrospective lineage tracing using SPIM for zebrafish organogenesis studies , 2011, Journal of biophotonics.
[5] Charless C. Fowlkes,et al. Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline , 2006, Genome Biology.
[6] F. Naef,et al. Whole-embryo modeling of early segmentation in Drosophila identifies robust and fragile expression domains. , 2011, Biophysical journal.
[7] D. Iber,et al. The mechanism of sudden stripe formation during dorso-ventral patterning in Drosophila , 2007, Journal of mathematical biology.
[8] Ruth E Baker,et al. Mathematical models of morphogen gradients and their effects on gene expression , 2012, Wiley interdisciplinary reviews. Developmental biology.
[9] L. Lu,et al. Distance measurements via the morphogen gradient of Bicoid in Drosophila embryos , 2010, BMC Developmental Biology.
[10] James Sharpe,et al. Budding behaviors: Growth of the limb as a model of morphogenesis , 2011, Developmental dynamics : an official publication of the American Association of Anatomists.
[11] G. Martin,et al. Conditional inactivation of Fgf4 reveals complexity of signalling during limb bud development , 2000, Nature Genetics.
[12] Charless C. Fowlkes,et al. A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm , 2008, Cell.
[13] M. Mullins,et al. The BMP signaling gradient patterns dorsoventral tissues in a temporally progressive manner along the anteroposterior axis. , 2008, Developmental cell.
[14] Olaf Schenk,et al. Solving unsymmetric sparse systems of linear equations with PARDISO , 2002, Future Gener. Comput. Syst..
[15] James A Glazier,et al. Multicell simulations of development and disease using the CompuCell3D simulation environment. , 2009, Methods in molecular biology.
[16] Eric F. Wieschaus,et al. The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized mRNA , 2011, PLoS biology.
[17] Yina Li,et al. Shh and Gli3 are dispensable for limb skeleton formation but regulate digit number and identity , 2002, Nature.
[18] Steffen Lemke,et al. BMP-dependent serosa and amnion specification in the scuttle fly Megaselia abdita , 2012, Development.
[19] Charless C. Fowlkes,et al. Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics , 2006, Genome Biology.
[20] N. Barkai,et al. Scaling of the BMP activation gradient in Xenopus embryos , 2008, Nature.
[21] Abbas Shirinifard,et al. Multi-scale modeling of tissues using CompuCell3D. , 2012, Methods in cell biology.
[22] A. Mogilner,et al. Modeling cellular processes in 3D. , 2011, Trends in cell biology.
[23] D. Odde,et al. Assessment of Transport Mechanisms Underlying the Bicoid Morphogen Gradient , 2011, Cellular and molecular bioengineering.
[24] David M. Umulis,et al. The extracellular regulation of bone morphogenetic protein signaling , 2009, Development.
[25] N. Barkai,et al. Robustness of the BMP morphogen gradient in Drosophila embryonic patterning , 2022 .
[26] W. Bialek,et al. Stability and Nuclear Dynamics of the Bicoid Morphogen Gradient , 2007, Cell.
[27] Kwanghun Chung,et al. A microfluidic array for large-scale ordering and orientation of embryos , 2010, Nature Methods.
[28] H G Othmer,et al. A mathematical model for outgrowth and spatial patterning of the vertebrate limb bud. , 1999, Journal of theoretical biology.
[29] Philipp J. Keller,et al. Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy , 2008, Science.
[30] A. Brivanlou,et al. Scaling of BMP gradients in Xenopus embryos , 2009, Nature.
[31] Mathieu Coppey,et al. Modelling the Bicoid gradient , 2010, Development.
[32] Qing Nie,et al. Formation of the BMP activity gradient in the Drosophila embryo. , 2005, Developmental cell.
[33] E. Robertis,et al. Extracellular regulation of BMP signaling , 2010, Current Biology.
[34] Rajan P Kulkarni,et al. Tunability and Noise Dependence in Differentiation Dynamics , 2007, Science.
[35] Qing Nie,et al. Computational analysis of BMP gradients in dorsal-ventral patterning of the zebrafish embryo. , 2007, Journal of theoretical biology.
[36] Philipp J. Keller,et al. Digital scanned laser light-sheet fluorescence microscopy (DSLM) of zebrafish and Drosophila embryonic development. , 2011, Cold Spring Harbor protocols.
[37] John Reinitz,et al. FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution , 2008, Nucleic Acids Res..
[38] David M. Umulis,et al. Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins. , 2010, Developmental cell.