Identification of Species Origin of Meat and Meat Products on the DNA Basis: A Review

The adulteration/substitution of meat has always been a concern for various reasons such as public health, religious factors, wholesomeness, and unhealthy competition in meat market. Consumer should be protected from these malicious practices of meat adulterations by quick, precise, and specific identification of meat animal species. Several analytical methodologies have been employed for meat speciation based on anatomical, histological, microscopic, organoleptic, chemical, electrophoretic, chromatographic, or immunological principles. However, by virtue of their inherent limitations, most of these techniques have been replaced by the recent DNA-based molecular techniques. In the last decades, several methods based on polymerase chain reaction have been proposed as useful means for identifying the species origin in meat and meat products, due to their high specificity and sensitivity, as well as rapid processing time and low cost. This review intends to provide an updated and extensive overview on the DNA-based methods for species identification in meat and meat products.

[1]  Allan C. Wilson,et al.  Mitochondrial DNA sequences of primates: Tempo and mode of evolution , 2005, Journal of Molecular Evolution.

[2]  R. Osta,et al.  Beef- and bovine-derived material identification in processed and unprocessed food and feed by PCR amplification. , 2002, Journal of agricultural and food chemistry.

[3]  H. Broll,et al.  Quantitative determination of commercially relevant species in foods by real‐time PCR , 2007 .

[4]  A. Arslan,et al.  Identification of Meat Species by Polymerase Chain Reaction (PCR) Technique , 2007 .

[5]  N. King Species identification of cooked meats by enzyme-staining of isoelectricfocusing gels. , 1984, Meat science.

[6]  F. Colombo,et al.  Differentiation of the species ostrich (Struthio camelus) and emu (Dromaius novaehollandiae) by polymerase chain reaction using an ostrich-specific primer pair. , 2000, Meat science.

[7]  R. Bridgman,et al.  Monoclonal antibody-based sandwich enzyme-linked immunosorbent assay for sensitive detection of prohibited ruminant proteins in feedstuffs. , 2004, Journal of food protection.

[8]  M. Dharne,et al.  Evaluation of mitochondrial 12S rRNA gene in the identification of Panthera pardusfusca (Meyer, 1794) from field-collected scat samples in the Western Ghats, Maharashtra, India , 2007 .

[9]  H. Parkes,et al.  Identification of the species of origin of raw and cooked meat products using oligonucleotide probes. , 1997 .

[10]  K. McDonnell,et al.  Development of a DNA-based assay for species identification in meat and bone meal , 2001 .

[11]  G. Pesole,et al.  The main regulatory region of mammalian mitochondrial DNA: Structure-function model and evolutionary pattern , 1991, Journal of Molecular Evolution.

[12]  J. Chisholm,et al.  Truncation of oligonucleotide primers confers specificity on real-time polymerase chain reaction assays for food authentication , 2004, Food additives and contaminants.

[13]  J. Chisholm,et al.  The detection of horse and donkey using real-time PCR. , 2005, Meat science.

[14]  A. Wilson,et al.  Paternal inheritance of mitochondrial DNA in mice , 1991, Nature.

[15]  J. Lenstra,et al.  Differentiation of cattle species in beef by PCR-RFLP of mitochondrial and satellite DNA. , 2002, Meat science.

[16]  S. Phang,et al.  Random amplified polymorphic DNA (RAPD) fingerprints for identification of red meat animal species. , 1998, Meat science.

[17]  E. Hagelberg,et al.  Evidence for mitochondrial DNA recombination in a human population of island Melanesia , 1999, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[18]  Z. Mingguang,et al.  Establishment and application of a polymerase chain reaction for the identification of beef. , 1999, Meat science.

[19]  A. K. Daníelsdóttir,et al.  Identification of marine mammal species in food products. , 2000 .

[20]  Y. Choy,et al.  Application of RAPD Methods in Meat for Beef Breed Identification , 2001 .

[21]  S. Comincini,et al.  Application of quantitative real-time PCR in the detection of prion-protein gene species-specific DNA sequences in animal meals and feedstuffs. , 2006, Journal of food protection.

[22]  C Saccone,et al.  Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. , 1997, Gene.

[23]  J. Lüthy,et al.  Quantitative competitive (QC) PCR for quantification of porcine DNA. , 2001, Meat science.

[24]  D. Farrell,et al.  Characterization of a polymerase chain reaction-based approach for the simultaneous detection of multiple animal-derived materials in animal feed. , 2003, Journal of food protection.

[25]  I. González,et al.  Identification of goose (Anser anser) and mule duck (Anasplatyrhynchos x Cairina moschata) foie gras by multiplex polymerase chain reaction amplification of the 5S RDNA gene. , 2001, Journal of agricultural and food chemistry.

[26]  T. García,et al.  PCR identification of beef, sheep, goat, and pork in raw and heat-treated meat mixtures. , 2004, Journal of food protection.

[27]  T. García,et al.  Production of a horse‐specific monoclonal antibody and detection of horse meat in raw meat mixtures by an indirect ELISA , 1994 .

[28]  G. Tantillo,et al.  Duplex polymerase chain reaction for detection of pork meat in horse meat fresh sausages from Italian retail sources , 2005 .

[29]  E. Ruiz-Pesini,et al.  Direct and highly species-specific detection of pork meat and fat in meat products by PCR amplification of mitochondrial DNA. , 2000, Journal of agricultural and food chemistry.

[30]  B. Blais,et al.  Cloth-based hybridization array system for expanded identification of the animal species origin of derived materials in feeds. , 2007, Journal of food protection.

[31]  M. Saini,et al.  Characterisation of peacock (Pavo cristatus) mitochondrial 12S rRNA sequence and its use in differentiation from closely related poultry species , 2007, British poultry science.

[32]  S Muroya,et al.  A quick and simple method for the identification of meat species and meat products by PCR assay. , 1999, Meat science.

[33]  P. Carnegie,et al.  Identification of gourmet meat using FINS (forensically informative nucleotide sequencing). , 1994, BioTechniques.

[34]  M. T. Bottero,et al.  A multiplex PCR assay for the identification of animal species in feedstuffs. , 2004, Molecular and cellular probes.

[35]  T. García,et al.  Identification of goose, mule duck, chicken, turkey, and swine in foie gras by species-specific polymerase chain reaction. , 2003, Journal of agricultural and food chemistry.

[36]  A. K Lockley,et al.  DNA-based methods for food authentication , 2000 .

[37]  J. Murby,et al.  Evaluation of a DNA fingerprinting method for determining the species origin of meats. , 2000, Meat science.

[38]  C. Labie,et al.  SDS-PAGE technique for the species identification of cooked meat , 1991 .

[39]  E. Chung,et al.  Identification of Hanwoo meat using PCR-RFLP marker of MC1R gene associated with bovine coat color. , 2000 .

[40]  N. Huang,et al.  Species Identification of Meat Products Using the Cytochrome B Gene , 2005 .

[41]  R. Osta,et al.  Technical note: A quick and more sensitive method to identify pork in processed and unprocessed food by PCR amplification of a new specific DNA fragment. , 2001, Journal of animal science.

[42]  J. Lüthy,et al.  Detection of pork in heated meat products by the polymerase chain reaction. , 1994, Journal of AOAC International.

[43]  K. Bhilegaonkar,et al.  Studies on characterisation of thermostable antigens of adrenals and muscle tissues of meat animals. , 1990 .

[44]  S. Radu,et al.  Meat species identification and Halal authentication analysis using mitochondrial DNA. , 2009, Meat science.

[45]  Armand Sánchez,et al.  Identification of bovine material in porcine spray-dried blood derivatives using the Polymerase Chain Reaction technique , 2004 .

[46]  Teresa García,et al.  TaqMan real-time PCR for the detection and quantitation of pork in meat mixtures. , 2005, Meat science.

[47]  R. Patterson,et al.  Monoclonal antibody sandwich ELISA for the potential detection of chicken meat in mixtures of raw beef and pork. , 1991, Meat science.

[48]  R. Clemens,et al.  Production of monoclonal antibody for the detection of meat and bone meal in animal feed. , 2004, Journal of agricultural and food chemistry.

[49]  E. Cunningham,et al.  Biological identification systems: genetic markers. , 2001, Revue scientifique et technique.

[50]  P. Grimont,et al.  Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. , 1993, Research in microbiology.

[51]  P. V. Ravindra,et al.  Precise and rapid identification of ovine-caprine origin of meat by specific PCR assay. , 2007 .

[52]  P S Girish,et al.  Meat species identification by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) of mitochondrial 12S rRNA gene. , 2005, Meat science.

[53]  R. Osta,et al.  Quantitative PCR detection of pork in raw and heated ground beef and pâté. , 2002, Journal of agricultural and food chemistry.

[54]  M. Cronin Intraspecific variation in mitochondrial DNA of North American cervids , 1992 .

[55]  Ashutosh Kumar,et al.  Species identification and authentication of tissues of animal origin using mitochondrial and nuclear markers. , 2007, Meat science.

[56]  Jerilyn A. Walker,et al.  Quantitative PCR for DNA identification based on genome-specific interspersed repetitive elements. , 2004, Genomics.

[57]  P. Thomsen,et al.  A comparison of DNA-hybridization, immunodiffusion, countercurrent immunoelectrophoresis and isoelectric focusing for detecting the admixture of pork to beef. , 1990, Meat science.

[58]  A. K. Lockley,et al.  An actin gene-related polymerase chain reaction (PCR) test for identification of chicken in meat mixtures. , 1999, Meat science.

[59]  F. Toldrá,et al.  PCR-based fingerprinting techniques for rapid detection of animal species in meat products. , 2004, Meat science.

[60]  Ashok Kumar,et al.  Identification of chicken, duck, pigeon and pig meat by species-specific markers of mitochondrial origin. , 2009, Meat science.

[61]  S. Pääbo,et al.  Nuclear insertion sequences of mitochondrial DNA predominate in hair but not in blood of elephants , 1999, Molecular ecology.

[62]  Hsiu-Lin Huang,et al.  RAPD Fingerprinting for the Species Identification of Animals , 2003 .

[63]  J. Lüthy,et al.  Polymerase chain reaction-restriction fragment length polymorphism analysis: a simple method for species identification in food. , 1995, Journal of AOAC International.

[64]  Z. Kesmen,et al.  PCR assay for the identification of animal species in cooked sausages. , 2007, Meat science.

[65]  幸一 千国,et al.  18SリボソームRNAによる獣肉,鳥肉,魚肉の特定 , 1998 .

[66]  T. Matsunaga,et al.  Effects of Processing Conditions on Species Identification of Meat Products. , 1999 .

[67]  P. Savelkoul,et al.  Real-time PCR detection of ruminant DNA. , 2004, Journal of food protection.

[68]  A. Anjaneyulu,et al.  Polymerase Chain Reaction–Restriction Fragment Length Polymorphism of Mitochondrial 12S rRNA Gene: A Simple Method for Identification of Poultry Meat Species , 2007, Veterinary Research Communications.

[69]  I. Martinez,et al.  Species identification in meat products by RAPD analysis , 1998 .

[70]  P. Thomsen,et al.  Differentiation of closely related species by DNA hybridization. , 1991, Meat science.

[71]  G. Scoles,et al.  Variability of the random amplified polymorphic DNA assay among thermal cyclers, and effects of primer and DNA concentration. , 1993, Molecular and cellular probes.

[72]  K. Mullis,et al.  Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. , 1986, Cold Spring Harbor symposia on quantitative biology.

[73]  T. García,et al.  PCR identification of meats from chamois (Rupicapra rupicapra), pyrenean ibex (Capra pyrenaica), and mouflon (Ovis ammon) targeting specific sequences from the mitochondrial D-loop region. , 2007, Meat science.

[74]  J. Welsh,et al.  Fingerprinting genomes using PCR with arbitrary primers. , 1990, Nucleic acids research.

[75]  A. Arslan,et al.  Effect of method of cooking on identification of heat processed beef using polymerase chain reaction (PCR) technique. , 2006, Meat science.

[76]  A. Puyet,et al.  Evaluation of post-polymerase chain reaction melting temperature analysis for meat species identification in mixed DNA samples. , 2006, Journal of agricultural and food chemistry.

[77]  P. Smethurst,et al.  Investigation of methods to detect mechanically recovered meat in meat products - IV: Immunology. , 1995, Meat science.

[78]  D. Sharma,et al.  Differentiation of meat species by means of Polymerase Chain Reaction technique , 2008 .

[79]  K. Hargin,et al.  Investigation of methods to detect mechanically recovered meat in meat products - III: Microscopy. , 1995, Meat science.

[80]  S. Totey,et al.  Detection of species-specific genetic markers in farm animals through random amplified polymorphic DNA (RAPD). , 1996, Genetic analysis : biomolecular engineering.

[81]  D. Mebs,et al.  Identification of animal species in meat samples by DNA-analysis , 1999 .

[82]  J. C. Lee,et al.  Random amplified polymorphic DNA polymerase chain reaction (RAPD PCR) fingerprints in forensic species identification. , 1994, Forensic science international.

[83]  A. Abdulmawjood,et al.  Identification of Ostrich Meat by Restriction Fragment Length Polymorphism (RFLP) Analysis of cytochrome b Gene , 2002 .

[84]  S. Zimmermann,et al.  Tierartenidentifizierung aus Fleischproben mittels DNA-Analyse , 1998 .

[85]  B. Brenig,et al.  Diagnostic polymorphisms in the mitochondrial cytochrome b gene allow discrimination between cattle, sheep, goat, roe buck and deer by PCR-RFLP , 2004, BMC Genetics.

[86]  A. Tiwari,et al.  Polymerase chain reaction assay for identification of chicken in meat and meat products. , 2009 .

[87]  W. Rajapaksha,et al.  Development of PCR assay for differentiation of some important wild animal meat of Sri Lanka. , 2002, Journal of veterinary medicine. B, Infectious diseases and veterinary public health.

[88]  K. Chikuni,et al.  Determination of mitochondrial cytochrome B gene sequence for red deer (Cervus elaphus) and the differentiation of closely related deer meats. , 1998, Meat science.

[89]  M. Dharne,et al.  Species determination and authentication of meat samples by mitochondrial 12S rRNA gene sequence analysis and conformation- sensitive gel electrophoresis , 2004 .

[90]  R. Osta,et al.  Random amplified polymorphic DNA fingerprints for identification of species in poultry pâté. , 2001, Poultry science.

[91]  C. Baur,et al.  Spezifizierung hitzedenaturierter Fleischproben durch DNA-Analyse , 1987 .

[92]  A. Puyet,et al.  Identification and quantitation of species in complex DNA mixtures by real-time polymerase chain reaction. , 2005, Analytical biochemistry.

[93]  Cunningham Ep,et al.  Biological identification systems: genetic markers. , 2001 .

[94]  R. Branciari,et al.  PCR-RFLP analysis for the identification of species in heat-treated meat products. , 2000 .

[95]  Wentao Xu,et al.  A novel common single primer multiplex polymerase chain reaction (CSP-M-PCR) method for the identification of animal species in minced meat , 2008 .

[96]  S. Wasser,et al.  The potential of mitochondrial DNA markers and polymerase chain reaction-restriction fragment length polymorphism for domestic and wild species identification , 2006 .

[97]  Paolo Ajmone-Marsan,et al.  Standard and Light-Cycler PCR methods for animal DNA species detection in animal feedstuffs , 2008 .

[98]  A. R. Hayden IMMUNOCHEMICAL DETECTION OF OVINE, PORCINE AND EQUINE FLESH IN BEEF PRODUCTS WITH ANTISERA TO SPECIES MYOGLOBIN , 1979 .

[99]  W. Bai,et al.  Development of an assay for rapid identification of meat from yak and cattle using polymerase chain reaction technique. , 2009, Meat science.

[100]  S. Comincini,et al.  Identification of species in animal feedstuffs by polymerase chain reaction--restriction fragment length polymorphism analysis of mitochondrial DNA. , 2001, Journal of agricultural and food chemistry.

[101]  M. T. Bottero,et al.  Development of a PCR assay for the detection of animal tissues in ruminant feeds. , 2003, Journal of food protection.

[102]  A. Cepeda,et al.  Comparison of extraction methods for the recovery, amplification and species‐specific analysis of DNA from bone and bone meals , 2002, Electrophoresis.

[103]  Chich-Sheng Lin,et al.  Establishment and application of a fluorescent polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method for identifying porcine, caprine, and bovine meats. , 2003, Journal of agricultural and food chemistry.

[104]  J. Lenstra,et al.  Species identification by oligonucleotide hybridisation: the influence of processing of meat products , 1999 .

[105]  Y. B. Che Man,et al.  Identification of pork derivatives in food products by species-specific polymerase chain reaction (PCR) for halal verification , 2007 .

[106]  A. Moussavi,et al.  Fraud identification in industrial meat products by multiplex PCR assay. , 2009 .

[107]  J. Lenstra,et al.  Rapid species identification in meat by using satellite DNA probes , 1995, Zeitschrift fur Lebensmittel-Untersuchung und -Forschung.

[108]  S Sasazaki,et al.  Development of breed identification markers derived from AFLP in beef cattle. , 2004, Meat science.

[109]  T. Kuchta,et al.  Detection of the beef component in meat products using polymerase chain reaction , 2002 .

[110]  M. Yoshino,et al.  Development of species identification tests targeting the 16S ribosomal RNA coding region in mitochondrial DNA , 2006, International Journal of Legal Medicine.

[111]  E. Ilg,et al.  Identifying unknown game species: experience with nucleotide sequencing of the mitochondrial cytochrome b gene and a subsequent basic local alignment search tool search , 2001 .

[112]  J. Hayashi,et al.  Absence of extensive recombination between inter- and intraspecies mitochondrial DNA in mammalian cells. , 1985, Experimental cell research.

[113]  T. García,et al.  Mitochondrial markers for the detection of four duck species and the specific identification of Muscovy duck in meat mixtures using the polymerase chain reaction. , 2007, Meat science.

[114]  H. Broll,et al.  Development and design of a ‘ready-to-use’ reaction plate for a PCR-based simultaneous detection of animal species used in foods , 2007 .

[115]  M. Yamanoue,et al.  Species identification of meats and meat products by PCR , 1996 .

[116]  K Chikuni,et al.  Polymerase chain reaction assay for detection of sheep and goat meats. , 1994, Meat science.

[117]  E. Zouros,et al.  Direct evidence for extensive paternal mitochondrial DNA inheritance in the marine mussel Mytilus , 1992, Nature.

[118]  R. Branciari,et al.  Use of duplex polymerase chain reaction (duplex-PCR) technique to identify bovine and water buffalo milk used in making mozzarella cheese , 2001, Journal of Dairy Research.

[119]  S. Guha,et al.  Development of novel heminested PCR assays based on mitochondrial 16s rRNA gene for identification of seven pecora species , 2005, BMC genetics.

[120]  B. Herman Determination of the animal origin of raw food by species-specific PCR , 2001, Journal of Dairy Research.

[121]  R. Johnston,et al.  Detection of Beef, Sheep, Deer, and Horse Meat in Cooked Meat Products by Enzyme-Linked Immunosorbent Assay , 1992 .

[122]  S. Garrett,et al.  Detection of meat species using TaqMan real-time PCR assays. , 2004, Meat science.

[123]  N. Z. Ballin,et al.  Sex determination in beef by melting curve analysis of PCR amplicons from the amelogenin locus. , 2007, Meat science.

[124]  C. Hitchcock,et al.  Methodology for meat species identification: A review. , 1985, Meat science.

[125]  K. Chikuni,et al.  Species identification of cooked meats by DNA hybridization assay. , 1990, Meat science.

[126]  A. Meyer,et al.  Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[127]  P S Girish,et al.  Sequence analysis of mitochondrial 12S rRNA gene can identify meat species. , 2004, Meat science.

[128]  A. Gruber,et al.  A survey of the inter- and intraspecific RAPD markers of Eimeria spp. of the domestic fowl and the development of reliable diagnostic tools , 2003, Parasitology Research.

[129]  Y. Man,et al.  Detection of pig derivatives in food products for halal authentication by polymerase chain reaction –restriction fragment length polymorphism , 2007 .