Methylation of Dual Specificity Phosphatase 4 Controls Cell Differentiation

A collection of signaling and epigenetic events needs to be orchestrated for normal development of hematopoietic lineages. While mitogen-activated protein (MAP) kinases (MAPKs) and multiple epigenetic modulators have been implicated in the megakaryocytic (Mk) cell differentiation, the underlying molecular mechanisms of signaling-epigenetic crosstalk remain unclear. MAPKs are in general inactivated by dual specificity phosphatases (DUSPs), whose activities are tightly regulated by various posttranslational modifications. Using knockdown screening and single-cell transcriptional analysis, we determined that DUSP4 is the phosphatase that inactivates p38 MAPK in hematopoietic cells and serves as a key regulator to promote Mk differentiation. With the nextgeneration Bioorthogonal Profiling of Protein Methylation technology for live cells, we identified DUSP4 as a PRMT1 substrate. Mechanistically, PRMT1-mediated Arg351 methylation of DUSP4 triggers its ubiquitinylation by HUWE1 (an E3 ligase) and then degradation, which results in p38 MAPK activation and inhibition of Mk differentiation in vitro and in vivo. Interestingly, the mechanistic axis of the DUSP4 degradation and p38 activation is also associated with a transcriptional signature of immune activation and thus argues immunological roles of Mk cells. Collectively, these results demonstrate a critical role of PRMT1-mediated posttranslational modification of DUSP4 in regulation of Mk differentiation and maturation. In the context of thrombocytopenia observed in myelodysplastic syndromes (MDS), we demonstrated that high levels of p38 MAPK and PRMT1 are associated with low platelet counts and adverse prognosis, while pharmacological inhibition of p38 MAPK or PRMT1 stimulates megakaryopoiesis in MDS samples. These findings provide novel mechanistic insights into the role of the PRMT1-DUSP4-p38 axis on Mk differentiation and present a targeting strategy for treatment of thrombocytopenia associated with myeloid malignancies such as MDS.

[1]  Juan Du,et al.  PRMT1-mediated FLT3 arginine methylation promotes maintenance of FLT3-ITD+ Acute Myeloid Leukemia. , 2019, Blood.

[2]  Thomas M. Norman,et al.  Exploring genetic interaction manifolds constructed from rich single-cell phenotypes , 2019, Science.

[3]  Bas J. Wouters,et al.  Therapeutic Targeting of RNA Splicing Catalysis through Inhibition of Protein Arginine Methylation. , 2019, Cancer cell.

[4]  S. Richard,et al.  The regulation, functions and clinical relevance of arginine methylation , 2019, Nature Reviews Molecular Cell Biology.

[5]  T. Cheng,et al.  New paradigms on hematopoietic stem cell differentiation , 2019, Protein & Cell.

[6]  Samuel L. Wolock,et al.  A comprehensive single cell transcriptional landscape of human hematopoietic progenitors , 2019, Nature Communications.

[7]  A. Mead,et al.  Single-cell approaches reveal novel cellular pathways for megakaryocyte and erythroid differentiation. , 2019, Blood.

[8]  S. Keyse,et al.  Dual-specificity MAP kinase phosphatases in health and disease☆ , 2019, Biochimica et biophysica acta. Molecular cell research.

[9]  Allon M. Klein,et al.  Lineage tracing on transcriptional landscapes links state to fate during differentiation , 2018, Science.

[10]  Bruce Aronow,et al.  The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification , 2018, Cell reports.

[11]  Tianhua Zhou,et al.  mTORC1-Regulated and HUWE1-Mediated WIPI2 Degradation Controls Autophagy Flux. , 2018, Molecular cell.

[12]  M. Ivan,et al.  P38α/JNK signaling restrains erythropoiesis by suppressing Ezh2-mediated epigenetic silencing of Bim , 2018, Nature Communications.

[13]  D. Krause,et al.  Concise Review: Bipotent Megakaryocytic‐Erythroid Progenitors: Concepts and Controversies , 2018, Stem cells.

[14]  Kevin R. Moon,et al.  Recovering Gene Interactions from Single-Cell Data Using Data Diffusion , 2018, Cell.

[15]  M. Luo Chemical and Biochemical Perspectives of Protein Lysine Methylation. , 2018, Chemical reviews.

[16]  C. Bock,et al.  An ERK-Dependent Feedback Mechanism Prevents Hematopoietic Stem Cell Exhaustion , 2018, Cell stem cell.

[17]  Juan Lin,et al.  DUSP1 enhances the chemoresistance of gallbladder cancer via the modulation of the p38 pathway and DNA damage/repair system. , 2018, Oncology letters.

[18]  L. Su,et al.  p38 MAPK is critical for nuclear translocation of IRF-7 during CpG-induced type I IFN expression in human plasmacytoid dendritic cells , 2018, The Journal of Immunology.

[19]  C. Holt,et al.  FUS Phase Separation Is Modulated by a Molecular Chaperone and Methylation of Arginine Cation-π Interactions , 2018, Cell.

[20]  Samuel L. Wolock,et al.  Population Snapshots Predict Early Hematopoietic and Erythroid Hierarchies , 2018, Nature.

[21]  Samuel L. Wolock,et al.  Clonal analysis of lineage fate in native hematopoiesis , 2017, Nature.

[22]  Zhon-Yin Zhang,et al.  Regulatory Mechanisms and Novel Therapeutic Targeting Strategies for Protein Tyrosine Phosphatases. , 2017, Chemical reviews.

[23]  Y. Li,et al.  Splicing factor SF3B1K700E mutant dysregulates erythroid differentiation via aberrant alternative splicing of transcription factor TAL1 , 2017, PloS one.

[24]  K. Komurov,et al.  c-Fos and Dusp1 confer non-oncogene addiction in BCR-ABL induced leukemia , 2017, Nature Medicine.

[25]  E. Passegué,et al.  The lung is a site of platelet biogenesis and a reservoir for hematopoietic progenitors , 2017, Nature.

[26]  Caleb Weinreb,et al.  SPRING: a kinetic interface for visualizing high dimensional single-cell expression data , 2017, bioRxiv.

[27]  Lars J. Jensen,et al.  Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells , 2016, Science Signaling.

[28]  Gazelle Zerafati,et al.  Adult human megakaryocyte-erythroid progenitors are in the CD34+CD38mid fraction. , 2016, Blood.

[29]  K. Pradhan,et al.  Pexmetinib: A Novel Dual Inhibitor of Tie2 and p38 MAPK with Efficacy in Preclinical Models of Myelodysplastic Syndromes and Acute Myeloid Leukemia. , 2016, Cancer research.

[30]  T. Morikawa,et al.  p38α Activates Purine Metabolism to Initiate Hematopoietic Stem/Progenitor Cell Cycling in Response to Stress. , 2016, Cell stem cell.

[31]  Kyle V. Butler,et al.  A Potent, Selective, and Cell-Active Inhibitor of Human Type I Protein Arginine Methyltransferases. , 2016, ACS chemical biology.

[32]  C. Leslie,et al.  Cross-talk between PRMT1-mediated methylation and ubiquitylation on RBM15 controls RNA splicing , 2015, eLife.

[33]  J. Etulain,et al.  Expression and functionality of Toll‐like receptor 3 in the megakaryocytic lineage , 2015, Journal of thrombosis and haemostasis : JTH.

[34]  P. Campbell,et al.  Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes , 2015, Nature Communications.

[35]  H. Kantarjian,et al.  A Phase I Study of Oral ARRY-614, a p38 MAPK/Tie2 Dual Inhibitor, in Patients with Low or Intermediate-1 Risk Myelodysplastic Syndromes , 2014, Clinical Cancer Research.

[36]  M. Luo,et al.  A sensitive mass spectrum assay to characterize engineered methionine adenosyltransferases with S-alkyl methionine analogues as substrates. , 2014, Analytical biochemistry.

[37]  Yuling Chen,et al.  Profiling substrates of protein arginine N-methyltransferase 3 with S-adenosyl-L-methionine analogues. , 2014, ACS chemical biology.

[38]  Ailan Guo,et al.  Immunoaffinity Enrichment and Mass Spectrometry Analysis of Protein Methylation , 2013, Molecular & Cellular Proteomics.

[39]  M. Luo,et al.  A journey toward Bioorthogonal Profiling of Protein Methylation inside living cells. , 2013, Current opinion in chemical biology.

[40]  H. Nakauchi,et al.  Clonal Analysis Unveils Self-Renewing Lineage-Restricted Progenitors Generated Directly from Hematopoietic Stem Cells , 2013, Cell.

[41]  I. Macaulay,et al.  Platelet-biased stem cells reside at the apex of the haematopoietic stem-cell hierarchy , 2013, Nature.

[42]  M. Cobb,et al.  Chromatin-tethered MAPKs. , 2013, Current opinion in cell biology.

[43]  B. Aronow,et al.  Expression of plasma membrane receptor genes during megakaryocyte development. , 2013, Physiological genomics.

[44]  Shiaw-Min Hwang,et al.  Protein Arginine Methyltransferase 1 Interacts with and Activates p38α to Facilitate Erythroid Differentiation , 2013, PloS one.

[45]  Y. Liu,et al.  Profiling genome-wide chromatin methylation with engineered posttranslation apparatus within living cells. , 2013, Journal of the American Chemical Society.

[46]  R. Willette,et al.  Unrestrained p38 MAPK Activation in Dusp1/4 Double-Null Mice Induces Cardiomyopathy , 2013, Circulation research.

[47]  S. Keyse,et al.  Dual-specificity MAP kinase phosphatases (MKPs) , 2013, The FEBS journal.

[48]  J. Côté,et al.  Alternatively spliced protein arginine methyltransferase 1 isoform PRMT1v2 promotes the survival and invasiveness of breast cancer cells , 2012, Cell cycle.

[49]  G. Mills,et al.  Profiling of residual breast cancers after neoadjuvant chemotherapy identifies DUSP4 deficiency as a mechanism of drug resistance , 2012, Nature Medicine.

[50]  S. Ramsey,et al.  Patterns of blood product use among patients with myelodysplastic syndrome , 2012, Vox sanguinis.

[51]  M. Luo Current chemical biology approaches to interrogate protein methyltransferases. , 2012, ACS chemical biology.

[52]  M. Sola-Visner,et al.  Neonatal and adult megakaryopoiesis , 2011, Current opinion in hematology.

[53]  J. Workman,et al.  Signals and combinatorial functions of histone modifications. , 2011, Annual review of biochemistry.

[54]  M. Luo,et al.  Labeling substrates of protein arginine methyltransferase with engineered enzymes and matched S-adenosyl-L-methionine analogues. , 2011, Journal of the American Chemical Society.

[55]  Katsuya Ueno,et al.  Arginine methylation of BCL-2 antagonist of cell death (BAD) counteracts its phosphorylation and inactivation by Akt , 2011, Proceedings of the National Academy of Sciences.

[56]  A. Scorilas,et al.  Clinical evaluation of PRMT1 gene expression in breast cancer , 2011, Tumor Biology.

[57]  C. Bryant,et al.  MAP Kinase Phosphatase-2 Plays a Critical Role in Response to Infection by Leishmania mexicana , 2010, PLoS pathogens.

[58]  S. Watson,et al.  Critical role for ERK1/2 in bone marrow and fetal liver–derived primary megakaryocyte differentiation, motility, and proplatelet formation , 2009, Experimental hematology.

[59]  P. Nguyen,et al.  Myelodysplastic syndromes , 2009, Nature Reviews Disease Primers.

[60]  C. Geest,et al.  Mapk Signaling Pathways in the Regulation of Hematopoiesis Specificity in Mapk Activation and Function , 2009 .

[61]  K. Patterson,et al.  Dual-specificity phosphatases: critical regulators with diverse cellular targets. , 2009, The Biochemical journal.

[62]  A. Fukamizu,et al.  Arginine methylation of FOXO transcription factors inhibits their phosphorylation by Akt. , 2008, Molecular cell.

[63]  H. Chi,et al.  Acetylation of MKP-1 and the Control of Inflammation , 2008, Science Signaling.

[64]  S. Keyse,et al.  Dual-specificity MAP kinase phosphatases (MKPs) and cancer , 2008, Cancer and Metastasis Reviews.

[65]  C. Allis,et al.  Methylation of RUNX1 by PRMT1 abrogates SIN3A binding and potentiates its transcriptional activity. , 2008, Genes & development.

[66]  W. Vainchenker,et al.  FLT3-mediated p38-MAPK activation participates in the control of megakaryopoiesis in primary myelofibrosis. , 2007, Cancer research.

[67]  David Bryder,et al.  Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy. , 2007, Cell stem cell.

[68]  S. Keyse,et al.  Differential regulation of MAP kinase signalling by dual-specificity protein phosphatases , 2007, Oncogene.

[69]  A. Verma,et al.  From bloodjournal.hematologylibrary.org at PENN STATE UNIVERSITY on February 21, 2013. For personal use only. , 2005 .

[70]  J. Torchia,et al.  The Activity and Stability of the Transcriptional Coactivator p/CIP/SRC-3 Are Regulated by CARM1-Dependent Methylation , 2006, Molecular and Cellular Biology.

[71]  Keisuke Ito,et al.  Reactive oxygen species act through p38 MAPK to limit the lifespan of hematopoietic stem cells , 2006, Nature Medicine.

[72]  F. Boisvert,et al.  Methylation of MRE11 Regulates its Nuclear Compartmentalization , 2005, Cell cycle.

[73]  J. Ulaszek,et al.  Differentiation stage-specific activation of p38 mitogen-activated protein kinase isoforms in primary human erythroid cells , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[74]  François-Michel Boisvert,et al.  A Proteomic Analysis of Arginine-methylated Protein Complexes* , 2003, Molecular & Cellular Proteomics.

[75]  P. Vallance,et al.  Asymmetric Dimethylarginine Causes Hypertension and Cardiac Dysfunction in Humans and Is Actively Metabolized by Dimethylarginine Dimethylaminohydrolase , 2003, Arteriosclerosis, thrombosis, and vascular biology.

[76]  M. Daly,et al.  PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes , 2003, Nature Genetics.

[77]  I. Weissman,et al.  A role for Wnt signalling in self-renewal of haematopoietic stem cells , 2003, Nature.

[78]  A. Verma,et al.  Activation of the p38 Mitogen-activated Protein Kinase Mediates the Suppressive Effects of Type I Interferons and Transforming Growth Factor-β on Normal Hematopoiesis* , 2002, The Journal of Biological Chemistry.

[79]  C. Allis,et al.  Methylation of Histone H4 at Arginine 3 Facilitating Transcriptional Activation by Nuclear Hormone Receptor , 2001, Science.

[80]  Yohnosuke Kobayashi,et al.  Requirement of thrombopoietin-induced activation of ERK for megakaryocyte differentiation and of p38 for erythroid differentiation , 2001, Annals of Hematology.

[81]  Y. Miyakawa,et al.  Interferon-alpha directly represses megakaryopoiesis by inhibiting thrombopoietin-induced signaling through induction of SOCS-1. , 2000, Blood.

[82]  O. Witt,et al.  Butyrate-induced erythroid differentiation of human K562 leukemia cells involves inhibition of ERK and activation of p38 MAP kinase pathways. , 2000, Blood.

[83]  Y Nagata,et al.  Activation of p38 MAP kinase and JNK but not ERK is required for erythropoietin-induced erythroid differentiation. , 1998, Blood.

[84]  Xinmin Cao,et al.  Stress-induced immediate-early gene, egr-1, involves activation of p38/JNK1 , 1998, Oncogene.

[85]  R. Herrera,et al.  A role for the MEK/MAPK pathway in PMA-induced cell cycle arrest: modulation of megakaryocytic differentiation of K562 cells. , 1998, Experimental cell research.

[86]  N. Ahn,et al.  Megakaryocytic differentiation induced by constitutive activation of mitogen-activated protein kinase kinase , 1997, Molecular and cellular biology.

[87]  T Hamblin,et al.  International scoring system for evaluating prognosis in myelodysplastic syndromes. , 1997, Blood.

[88]  W. Vainchenker,et al.  Characterization of a bipotent erythro-megakaryocytic progenitor in human bone marrow. , 1996, Blood.

[89]  Kun-Liang Guan,et al.  Isolation and Characterization of a Novel Dual Specific Phosphatase, HVH2, Which Selectively Dephosphorylates the Mitogen-activated Protein Kinase (*) , 1995, The Journal of Biological Chemistry.

[90]  雁金 大樹 p38α activates purine metabolism to initiate hematopoietic stem/progenitor cell cycling in response to stress(要約) , 2016 .

[91]  R. Plevin,et al.  Inactivation of JNK activity by mitogen-activated protein kinase phosphatase-2 in EAhy926 endothelial cells is dependent upon agonist-specific JNK translocation to the nucleus. , 2001, Cellular signalling.