Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast
暂无分享,去创建一个
F. Balloux | J. Bähler | F. Sedlazeck | Daniel C. Jeffares | D. Speed | C. Dessimoz | C. Rallis | Clemency Jolly | L. Shaw | M. Hoti | D. Jeffares
[1] Guy Baele,et al. Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts , 2006, Cell.
[2] J. Bähler,et al. Selected Schizosaccharomyces pombe Strains Have Characteristics That Are Beneficial for Winemaking , 2016, PloS one.
[3] G. Sherlock,et al. Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation , 2016, G3: Genes, Genomes, Genetics.
[4] L. Rieseberg,et al. Recombination Rate Evolution and the Origin of Species. , 2016, Trends in ecology & evolution.
[5] D. Delneri,et al. Widespread Impact of Chromosomal Inversions on Gene Expression Uncovers Robustness via Phenotypic Buffering , 2016, Molecular biology and evolution.
[6] G. Bell,et al. Speciation driven by hybridization and chromosomal plasticity in a wild yeast , 2015, Nature Microbiology.
[7] Hideki Tanizawa,et al. Swi1Timeless Prevents Repeat Instability at Fission Yeast Telomeres , 2015, PLoS genetics.
[8] Danny A. Bitton,et al. AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast , 2015, Front. Genet..
[9] Tom O. Delmont,et al. Anvi’o: an advanced analysis and visualization platform for ‘omics data , 2015, PeerJ.
[10] Gabor T. Marth,et al. An integrated map of structural variation in 2,504 human genomes , 2015, Nature.
[11] Q. Qian,et al. Copy number variation at the GL7 locus contributes to grain size diversity in rice , 2015, Nature Genetics.
[12] Brendan D. O'Fallon,et al. The genomic and phenotypic diversity of Schizosaccharomyces pombe , 2015, Nature Genetics.
[13] K. Ohta,et al. Population Genomics of the Fission Yeast Schizosaccharomyces pombe , 2014, PloS one.
[14] Harmit S. Malik,et al. Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast , 2014, eLife.
[15] A. Friedrich,et al. Chromosomal Rearrangements as a Major Mechanism in the Onset of Reproductive Isolation in Saccharomyces cerevisiae , 2014, Current Biology.
[16] Adam J. Schwarz,et al. CNVs conferring risk of autism or schizophrenia affect cognition in controls , 2013, Nature.
[17] Leopold Parts,et al. A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes , 2014, Molecular biology and evolution.
[18] Arndt von Haeseler,et al. NextGenMap: fast and accurate read mapping in highly polymorphic genomes , 2013, Bioinform..
[19] I. Gordo,et al. Genome architecture is a selectable trait that can be maintained by antagonistic pleiotropy , 2013, Nature Communications.
[20] M. Kirkpatrick,et al. REPRODUCTIVE ISOLATION AND LOCAL ADAPTATION QUANTIFIED FOR A CHROMOSOME INVERSION IN A MALARIA MOSQUITO , 2013, Evolution; international journal of organic evolution.
[21] Hengshan Zhang,et al. Gene Copy-Number Variation in Haploid and Diploid Strains of the Yeast Saccharomyces cerevisiae , 2013, Genetics.
[22] Jun-Yi Leu,et al. Dynamic Large-Scale Chromosomal Rearrangements Fuel Rapid Adaptation in Yeast Populations , 2013, PLoS genetics.
[23] Ryan M. Layer,et al. LUMPY: a probabilistic framework for structural variant discovery , 2012, Genome Biology.
[24] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..
[25] Lusheng Huang,et al. A comprehensive survey of copy number variation in 18 diverse pig populations and identification of candidate copy number variable genes associated with complex traits , 2012, BMC Genomics.
[26] Doug Speed,et al. Improved heritability estimation from genome-wide SNPs. , 2012, American journal of human genetics.
[27] R. Aebersold,et al. Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells , 2012, Cell.
[28] Thomas Zichner,et al. DELLY: structural variant discovery by integrated paired-end and split-read analysis , 2012, Bioinform..
[29] D. Delneri,et al. Impact of Chromosomal Inversions on the Yeast DAL Cluster , 2012, PloS one.
[30] Ira M. Hall,et al. YAHA: fast and flexible long-read alignment with optimal breakpoint detection , 2012, Bioinform..
[31] Gabor T. Marth,et al. Haplotype-based variant detection from short-read sequencing , 2012, 1207.3907.
[32] B. Faircloth,et al. Primer3—new capabilities and interfaces , 2012, Nucleic acids research.
[33] Sean R. Collins,et al. Hierarchical modularity and the evolution of genetic interactomes across species. , 2012, Molecular cell.
[34] Daniel J. Kvitek,et al. Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments , 2012, Genome research.
[35] M. Suchard,et al. Bayesian Phylogenetics with BEAUti and the BEAST 1.7 , 2012, Molecular biology and evolution.
[36] M. Noor,et al. Genomic impacts of chromosomal inversions in parapatric Drosophila species , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.
[37] S. Hochreiter,et al. cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate , 2012, Nucleic acids research.
[38] P. Baumann,et al. A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity , 2011, G3: Genes | Genomes | Genetics.
[39] M. Noor,et al. Effects of Inversions on Within- and Between-Species Recombination and Divergence , 2011, Genome biology and evolution.
[40] Gonçalo R. Abecasis,et al. The variant call format and VCFtools , 2011, Bioinform..
[41] R. Kolodner,et al. A Genetic and Structural Study of Genome Rearrangements Mediated by High Copy Repeat Ty1 Elements , 2011, PLoS genetics.
[42] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[43] Deborah A Nickerson,et al. De novo rates and selection of large copy number variation. , 2010, Genome research.
[44] Manuel Holtgrewe,et al. Mason – A Read Simulator for Second Generation Sequencing Data , 2010 .
[45] D. Hermand,et al. Genome-wide mapping of nuclear mitochondrial DNA sequences links DNA replication origins to chromosomal double-strand break formation in Schizosaccharomyces pombe. , 2010, Genome research.
[46] K. T. Nishant,et al. The Baker's Yeast Diploid Genome Is Remarkably Stable in Vegetative Growth and Meiosis , 2010, PLoS genetics.
[47] Dongsup Kim,et al. Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe , 2010, Nature Biotechnology.
[48] Paramvir S. Dehal,et al. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.
[49] S. Forsburg,et al. Molecular genetics of Schizosaccharomyces pombe. , 2010, Methods in enzymology.
[50] M. Hurles,et al. Copy number variation in human health, disease, and evolution. , 2009, Annual review of genomics and human genetics.
[51] Kai Ye,et al. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads , 2009, Bioinform..
[52] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[53] Matthieu Legendre,et al. Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability , 2009, Science.
[54] Kevin P. Byrne,et al. Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome , 2009, PLoS genetics.
[55] David Botstein,et al. The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast , 2008, PLoS genetics.
[56] R. Redon,et al. Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes , 2007, Science.
[57] O. Niwa,et al. Gene expression and distribution of Swi6 in partial aneuploids of the fission yeast Schizosaccharomyces pombe. , 2007, Cell structure and function.
[58] Gianni Liti,et al. Sequence Diversity, Reproductive Isolation and Species Concepts in Saccharomyces , 2006, Genetics.
[59] B. Dujon,et al. Highly Variable Rates of Genome Rearrangements between Hemiascomycetous Yeast Lineages , 2006, PLoS genetics.
[60] J. Yates,et al. Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast. , 2003, Molecular biology of the cell.
[61] J. Hayles,et al. Molecular cloning and sequence analysis of mutant alleles of the fission yeast cdc2 protein kinase gene: Implications for cdc2+ protein structure and function , 1989, Molecular and General Genetics MGG.
[62] Jürg Bähler,et al. Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data , 2003, BMC Genomics.
[63] S. Oliver,et al. Engineering evolution to study speciation in yeasts , 2003, Nature.
[64] David Botstein,et al. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[65] B. Barrell,et al. The genome sequence of Schizosaccharomyces pombe , 2002, Nature.
[66] M. Noor,et al. Chromosomal inversions and the reproductive isolation of species , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[67] L H. Rieseberg,et al. Chromosomal rearrangements and speciation. , 2001, Trends in ecology & evolution.
[68] H. Muller,et al. REVERSIBILITY IN EVOLUTION CONSIDERED FROM THE STANDPOINT OF GENETICS 1 , 1939 .
[69] T. Dobzhansky,et al. On the Sterility of the Interracial Hybrids in Drosophila Pseudoobscura. , 1933, Proceedings of the National Academy of Sciences of the United States of America.