DNA Damage-Induced Acetylation of Lysine 3016 of ATM Activates ATM Kinase Activity

ABSTRACT The ATM protein kinase is essential for cells to repair and survive genotoxic events. The activation of ATM's kinase activity involves acetylation of ATM by the Tip60 histone acetyltransferase. In this study, systematic mutagenesis of lysine residues was used to identify regulatory ATM acetylation sites. The results identify a single acetylation site at lysine 3016, which is located in the highly conserved C-terminal FATC domain adjacent to the kinase domain. Antibodies specific for acetyl-lysine 3016 demonstrate rapid (within 5 min) in vivo acetylation of ATM following exposure to bleomycin. Furthermore, lysine 3016 of ATM is a substrate in vitro for the Tip60 histone acetyltransferase. Mutation of lysine 3016 does not affect unstimulated ATM kinase activity but does abolish upregulation of ATM's kinase activity by DNA damage, inhibits the conversion of inactive ATM dimers to active ATM monomers, and prevents the ATM-dependent phosphorylation of the p53 and chk2 proteins. These results are consistent with a model in which acetylation of lysine 3016 in the FATC domain of ATM activates the kinase activity of ATM. The acetylation of ATM on lysine 3016 by Tip60 is therefore a key step linking the detection of DNA damage and the activation of ATM kinase activity.

[1]  Y. Shiloh ATM and related protein kinases: safeguarding genome integrity , 2003, Nature Reviews Cancer.

[2]  K. Cerosaletti,et al.  Active Role for Nibrin in the Kinetics of Atm Activation , 2006, Molecular and Cellular Biology.

[3]  K. Willison,et al.  Electron microscopy and 3D reconstructions reveal that human ATM kinase uses an arm-like domain to clamp around double-stranded DNA , 2003, Oncogene.

[4]  P. Jeggo,et al.  Molecular and biochemical characterisation of DNA-dependent protein kinase-defective rodent mutant irs-20. , 1998, Nucleic acids research.

[5]  David E Neal,et al.  Tip60 and Histone Deacetylase 1 Regulate Androgen Receptor Activity through Changes to the Acetylation Status of the Receptor* , 2002, The Journal of Biological Chemistry.

[6]  Xiaofeng Jiang,et al.  The FATC Domains of PIKK Proteins Are Functionally Equivalent and Participate in the Tip60-dependent Activation of DNA-PKcs and ATM* , 2006, Journal of Biological Chemistry.

[7]  E. Brambilla,et al.  p14ARF Activates a Tip60-Dependent and p53-Independent ATM/ATR/CHK Pathway in Response to Genotoxic Stress , 2006, Molecular and Cellular Biology.

[8]  S. Grzesiek,et al.  The Solution Structure of the FATC Domain of the Protein Kinase Target of Rapamycin Suggests a Role for Redox-dependent Structural and Cellular Stability* , 2005, Journal of Biological Chemistry.

[9]  Laurence H Pearl,et al.  Three-dimensional structure and regulation of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). , 2005, Structure.

[10]  Stephen P. Jackson,et al.  Conserved modes of recruitment of ATM, ATR and DNA-PKcs to sites of DNA damage , 2005, Nature.

[11]  A. Kimura,et al.  Tip60 acetylates six lysines of a specific class in core histones in vitro , 1998, Genes to cells : devoted to molecular & cellular mechanisms.

[12]  Xiaofeng Jiang,et al.  Inhibition of histone acetyltransferase activity by anacardic acid sensitizes tumor cells to ionizing radiation , 2006, FEBS letters.

[13]  Jean Gautier,et al.  Two-step activation of ATM by DNA and the Mre11–Rad50–Nbs1 complex , 2006, Nature Structural &Molecular Biology.

[14]  Ji-Hoon Lee,et al.  ATM Activation by DNA Double-Strand Breaks Through the Mre11-Rad50-Nbs1 Complex , 2005, Science.

[15]  J. Ptak,et al.  High Frequency of Mutations of the PIK3CA Gene in Human Cancers , 2004, Science.

[16]  M. Kastan,et al.  Phosphorylation of SMC1 is a critical downstream event in the ATM-NBS1-BRCA1 pathway. , 2004, Genes & development.

[17]  Robert T Abraham,et al.  PI 3-kinase related kinases: 'big' players in stress-induced signaling pathways. , 2004, DNA repair.

[18]  Laurence H Pearl,et al.  Three-dimensional structure of the human DNA-PKcs/Ku70/Ku80 complex assembled on DNA and its implications for DNA DSB repair. , 2006, Molecular cell.

[19]  M. Kastan,et al.  DNA damage activates ATM through intermolecular autophosphorylation and dimer dissociation , 2003, Nature.

[20]  David J. Chen,et al.  Cell Cycle Dependence of DNA-dependent Protein Kinase Phosphorylation in Response to DNA Double Strand Breaks* , 2005, Journal of Biological Chemistry.

[21]  B. Price,et al.  Activation of p53 transcriptional activity requires ATM's kinase domain and multiple N-terminal serine residues of p53 , 2001, Oncogene.

[22]  L. Cantley,et al.  DNA Damage-induced Association of ATM with Its Target Proteins Requires a Protein Interaction Domain in the N Terminus of ATM* , 2005, Journal of Biological Chemistry.

[23]  H. Inoue,et al.  Carboxyl‐terminal region conserved among phosphoinositide‐kinase‐related kinases is indispensable for mTOR function in vivo and in vitro , 2000, Genes to cells : devoted to molecular & cellular mechanisms.

[24]  K. Manova,et al.  Role of Nbs1 in the activation of the Atm kinase revealed in humanized mouse models , 2005, Nature Cell Biology.

[25]  P. Russell,et al.  ATM Activation and Its Recruitment to Damaged DNA Require Binding to the C Terminus of Nbs1 , 2005, Molecular and Cellular Biology.

[26]  Qi Ding,et al.  Autophosphorylation-dependent remodeling of the DNA-dependent protein kinase catalytic subunit regulates ligation of DNA ends. , 2004, Nucleic acids research.

[27]  K. Khanna,et al.  Autophosphorylation of ataxia‐telangiectasia mutated is regulated by protein phosphatase 2A , 2004, The EMBO journal.

[28]  Jun Qin,et al.  Involvement of the TIP60 Histone Acetylase Complex in DNA Repair and Apoptosis , 2000, Cell.

[29]  William Arbuthnot Sir Lane,et al.  The c-MYC Oncoprotein Is a Substrate of the Acetyltransferases hGCN5/PCAF and TIP60 , 2004, Molecular and Cellular Biology.

[30]  M. Lavin,et al.  Involvement of novel autophosphorylation sites in ATM activation , 2006, The EMBO journal.

[31]  Xiaofeng Jiang,et al.  A role for the Tip60 histone acetyltransferase in the acetylation and activation of ATM. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[32]  P. Vogt,et al.  Phosphatidylinositol 3-kinase mutations identified in human cancer are oncogenic. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[33]  E. Sonnhammer,et al.  FAT: a novel domain in PIK-related kinases. , 2000, Trends in biochemical sciences.

[34]  Ji-Hoon Lee,et al.  Direct Activation of the ATM Protein Kinase by the Mre11/Rad50/Nbs1 Complex , 2004, Science.

[35]  Rein Aasland,et al.  The many colours of chromodomains. , 2004, BioEssays : news and reviews in molecular, cellular and developmental biology.

[36]  Sergei Kozlov,et al.  ATM signaling and genomic stability in response to DNA damage. , 2005, Mutation research.

[37]  P. Jeggo,et al.  The C-terminal conserved domain of DNA-PKcs, missing in the SCID mouse, is required for kinase activity. , 2000, Nucleic acids research.

[38]  M. Meyn Ataxia‐telangiectasia, cancer and the pathobiology of the ATM gene , 1999, Clinical genetics.

[39]  Yair Andegeko,et al.  Requirement of the MRN complex for ATM activation by DNA damage , 2003, The EMBO journal.

[40]  Katsunori Sugimoto,et al.  Role of the C terminus of Mec1 checkpoint kinase in its localization to sites of DNA damage. , 2005, Molecular biology of the cell.

[41]  R. Monnat,et al.  Roles of ATM and NBS1 in chromatin structure modulation and DNA double-strand break repair , 2007, Nature Cell Biology.

[42]  A. Nussenzweig,et al.  Autophosphorylation at serine 1987 is dispensable for murine Atm activation in vivo , 2006, Nature.