Building specificity with nonspecific RNA-binding proteins
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[1] J. Manley,et al. RNA polymerase II and the integration of nuclear events. , 2000, Genes & development.
[2] Adrian R. Krainer,et al. Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2 , 1992, Cell.
[3] B. Graveley. Alternative splicing: increasing diversity in the proteomic world. , 2001, Trends in genetics : TIG.
[4] R. Darnell,et al. Sequence-Specific RNA Binding by a Nova KH Domain Implications for Paraneoplastic Disease and the Fragile X Syndrome , 2000, Cell.
[5] A. Krainer,et al. Involvement of SR proteins in mRNA surveillance. , 2004, Molecular cell.
[6] H. Le Hir,et al. Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions. , 2000, Genes & development.
[7] R. Amann,et al. Predictive Identification of Exonic Splicing Enhancers in Human Genes , 2022 .
[8] C. Guthrie,et al. Mechanical Devices of the Spliceosome: Motors, Clocks, Springs, and Things , 1998, Cell.
[9] B. Blencowe. Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases. , 2000, Trends in biochemical sciences.
[10] A. Kornblihtt,et al. Alternative splicing: multiple control mechanisms and involvement in human disease. , 2002, Trends in genetics : TIG.
[11] Gene W. Yeo,et al. Systematic Identification and Analysis of Exonic Splicing Silencers , 2004, Cell.
[12] J. Steitz,et al. A molecular link between SR protein dephosphorylation and mRNA export. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[13] J. Manley,et al. Phosphorylation–dephosphorylation differentially affects activities of splicing factor ASF/SF2 , 1998, The EMBO journal.
[14] C. Schütt,et al. Structure, function and evolution of sex-determining systems in Dipteran insects. , 2000, Development.
[15] A. Krainer,et al. Substrate Specificities of SR Proteins in Constitutive Splicing Are Determined by Their RNA Recognition Motifs and Composite Pre-mRNA Exonic Elements , 1999, Molecular and Cellular Biology.
[16] G. Clore,et al. Molecular basis of sequence‐specific single‐stranded DNA recognition by KH domains: solution structure of a complex between hnRNP K KH3 and single‐stranded DNA , 2002, The EMBO journal.
[17] Melissa J. Moore,et al. Intron recognition comes of AGe , 2000, Nature Structural Biology.
[18] M. Adams,et al. The KH-type RNA-binding protein PSI is required for Drosophila viability, male fertility, and cellular mRNA processing. , 2002, Genes & development.
[19] T. Cooper,et al. Identification of a new class of exonic splicing enhancers by in vivo selection , 1997, Molecular and cellular biology.
[20] J. Manley,et al. Determinants of SR protein specificity. , 1999, Current opinion in cell biology.
[21] Michael R. Green,et al. Interaction of U2AF65 RS Region with Pre-mRNA of Branch Point and Promotion Base Pairing with U2 snRNA , 1996, Science.
[22] B. Chabot,et al. High-affinity hnRNP A1 binding sites and duplex-forming inverted repeats have similar effects on 5' splice site selection in support of a common looping out and repression mechanism. , 2002, RNA.
[23] Elmar Wahle,et al. Messenger RNA Turnover in Eukaryotes: Pathways and Enzymes , 2004, Critical reviews in biochemistry and molecular biology.
[24] A. Kornblihtt,et al. Multiple links between transcription and splicing. , 2004, RNA.
[25] M B Roth,et al. SR proteins: a conserved family of pre-mRNA splicing factors. , 1992, Genes & development.
[26] A. Krainer,et al. Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA. , 1999, Genes & development.
[27] A. Krainer,et al. Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1 , 2002, Nature Genetics.
[28] G. Westerveld,et al. Heterogeneous nuclear ribonucleoprotein G-T (HNRNP G-T) mutations in men with impaired spermatogenesis. , 2004, Molecular human reproduction.
[29] B. S. Baker,et al. Regulation of Sex-Specific Selection offruitless 5′ Splice Sites by transformerand transformer-2 , 1998, Molecular and Cellular Biology.
[30] D. Black. Mechanisms of alternative pre-messenger RNA splicing. , 2003, Annual review of biochemistry.
[31] A. Zahler,et al. Distinct functions of SR proteins in alternative pre-mRNA splicing. , 1993, Science.
[32] P. Herrlich,et al. Signal-dependent regulation of splicing via phosphorylation of Sam68 , 2002, Nature.
[33] D. Black,et al. A CaMK IV responsive RNA element mediates depolarization-induced alternative splicing of ion channels , 2001, Nature.
[34] G. Orphanides,et al. A Unified Theory of Gene Expression , 2002, Cell.
[35] M. Perutz. Polar zippers: their role in human disease. , 1995, Protein science : a publication of the Protein Society.
[36] Michael R Green,et al. A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly. , 2004, Molecular cell.
[37] N. Gray,et al. A novel role for shuttling SR proteins in mRNA translation. , 2004, Genes & development.
[38] P. Sharp,et al. Splicing of precursors to mRNAs by the spliceosomes , 1993 .
[39] G. Varani,et al. Protein and RNA dynamics play key roles in determining the specific recognition of GU-rich polyadenylation regulatory elements by human Cstf-64 protein. , 2005, Journal of molecular biology.
[40] J. Steitz,et al. SR splicing factors serve as adapter proteins for TAP-dependent mRNA export. , 2003, Molecular cell.
[41] Xiang-Dong Fu. Specific commitment of different pre-mRNAs to splicing by single SR proteins , 1993, Nature.
[42] A. Zahler,et al. SC35 and Heterogeneous Nuclear Ribonucleoprotein A/B Proteins Bind to a Juxtaposed Exonic Splicing Enhancer/Exonic Splicing Silencer Element to Regulate HIV-1 tat Exon 2 Splicing* , 2004, Journal of Biological Chemistry.
[43] M. Swanson,et al. hnRNP complexes: composition, structure, and function. , 1999, Current opinion in cell biology.
[44] J. Cáceres,et al. Functional characterization of SR and SR‐related genes in Caenorhabditis elegans , 2000, The EMBO journal.
[45] Xiang-Dong Fu,et al. ASF/SF2-Regulated CaMKIIδ Alternative Splicing Temporally Reprograms Excitation-Contraction Coupling in Cardiac Muscle , 2005, Cell.
[46] A. Aguilera. Cotranscriptional mRNP assembly: from the DNA to the nuclear pore. , 2005, Current opinion in cell biology.
[47] I. Higuchi,et al. Control of Drosophila Sex-lethal pre-mRNA splicing by its own female-specific product. , 1992, Nucleic acids research.
[48] E. Wagner,et al. Polypyrimidine Tract Binding Protein Antagonizes Exon Definition , 2001, Molecular and Cellular Biology.
[49] G. Dreyfuss,et al. Structure of the Y14-Magoh Core of the Exon Junction Complex , 2003, Current Biology.
[50] D L Black,et al. Multisite RNA binding and release of polypyrimidine tract binding protein during the regulation of c-src neural-specific splicing. , 2000, Molecular cell.
[51] N. Kataoka,et al. SR proteins preferentially associate with mRNAs in the nucleus and facilitate their export to the cytoplasm , 2004, Genes to cells : devoted to molecular & cellular mechanisms.
[52] J. Manley,et al. A negative element in SMN2 exon 7 inhibits splicing in spinal muscular atrophy , 2003, Nature Genetics.
[53] J. C. Clemens,et al. Drosophila Dscam Is an Axon Guidance Receptor Exhibiting Extraordinary Molecular Diversity , 2000, Cell.
[54] Ravinder Singh,et al. Sex lethal and U2 small nuclear ribonucleoprotein auxiliary factor (U2AF65) recognize polypyrimidine tracts using multiple modes of binding. , 2003, RNA.
[55] C. Shin,et al. Dephosphorylated SRp38 acts as a splicing repressor in response to heat shock , 2004, Nature.
[56] A. Krainer,et al. Nuclear Export and Retention Signals in the RS Domain of SR Proteins , 2002, Molecular and Cellular Biology.
[57] A. Krainer,et al. Pre-mRNA splicing in the new millennium. , 2001, Current opinion in cell biology.
[58] J. Manley,et al. Genetic analysis of the SR protein ASF/SF2: interchangeability of RS domains and negative control of splicing. , 1998, Genes & development.
[59] G. Varani,et al. Recent advances in RNA-protein recognition. , 2001, Current opinion in structural biology.
[60] J. Kjems,et al. hnRNP A1 controls HIV-1 mRNA splicing through cooperative binding to intron and exon splicing silencers in the context of a conserved secondary structure. , 2002, RNA.
[61] Michael R. Green,et al. A Novel Peptide Recognition Mode Revealed by the X-Ray Structure of a Core U2AF35/U2AF65 Heterodimer , 2001, Cell.
[62] B. Graveley. Sorting out the complexity of SR protein functions. , 2000, RNA.
[63] Tom Maniatis,et al. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing , 1993, Cell.
[64] J. Valcárcel,et al. The hnRNP A1 protein regulates HIV‐1 tat splicing via a novel intron silencer element , 2001, The EMBO journal.
[65] B. Dauwalder,et al. Analysis of the functional specificity of RS domains in vivo , 1998, The EMBO journal.
[66] R. Reed,et al. Coupling transcription, splicing and mRNA export. , 2003, Current opinion in cell biology.
[67] Michael Sattler,et al. Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP. , 2003, Molecular cell.
[68] A. Krainer,et al. Listening to silence and understanding nonsense: exonic mutations that affect splicing , 2002, Nature Reviews Genetics.
[69] P. Zamore,et al. RNA annealing activity is intrinsically associated with U2AF. , 1993, The Journal of biological chemistry.
[70] O. Kent,et al. Structuring of the 3′ Splice Site by U2AF65* , 2003, Journal of Biological Chemistry.
[71] Hang Shi,et al. Crystal structure of the Drosophila Mago nashi-Y14 complex. , 2003, Genes & development.
[72] A. Krainer,et al. The Mkk3/6-p38–Signaling Cascade Alters the Subcellular Distribution of Hnrnp A1 and Modulates Alternative Splicing Regulation , 2000, The Journal of cell biology.
[73] M. Wollerton,et al. Polypyrimidine Tract Binding Protein Modulates Efficiency of Polyadenylation , 2004, Molecular and Cellular Biology.
[74] Melissa S Jurica,et al. Pre-mRNA splicing: awash in a sea of proteins. , 2003, Molecular cell.
[75] A. Krainer,et al. Pre-mRNA splicing in the absence of an SR protein RS domain. , 2000, Genes & development.
[76] M. Garcia-Blanco,et al. Protein–protein interactions and 5'-splice-site recognition in mammalian mRNA precursors , 1994, Nature.
[77] G. Dreyfuss,et al. Messenger-RNA-binding proteins and the messages they carry , 2002, Nature Reviews Molecular Cell Biology.
[78] T. Maniatis,et al. A systematic analysis of the factors that determine the strength of pre‐mRNA splicing enhancers , 1998, The EMBO journal.
[79] J. Valcárcel,et al. Alternative pre-mRNA splicing: the logic of combinatorial control. , 2000, Trends in biochemical sciences.
[80] A. Krainer,et al. Decrease in hnRNP A/B expression during erythropoiesis mediates a pre‐mRNA splicing switch , 2002, The EMBO journal.
[81] A. Krainer,et al. Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. , 2001, Molecular cell.
[82] C. Shin,et al. Cell signalling and the control of pre-mRNA splicing , 2004, Nature Reviews Molecular Cell Biology.
[83] D. Black,et al. Protein kinase A phosphorylation modulates transport of the polypyrimidine tract-binding protein , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[84] J. Valcárcel,et al. Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. , 1995, Science.
[85] Colin N. Dewey,et al. Initial sequencing and comparative analysis of the mouse genome. , 2002 .
[86] T. Maniatis,et al. Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer. , 1996, Genes & development.
[87] Elisa Izaurralde,et al. The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3 , 2004, Nature Structural &Molecular Biology.
[88] Massimo Caputi,et al. SR proteins and hnRNP H regulate the splicing of the HIV‐1 tev‐specific exon 6D , 2002, The EMBO journal.
[89] G. Clore,et al. Structure and dynamics of KH domains from FBP bound to single-stranded DNA , 2002, Nature.
[90] C. Shin,et al. The SR Protein SRp38 Represses Splicing in M Phase Cells , 2002, Cell.
[91] J. Manley,et al. Targeted disruption of an essential vertebrate gene: ASF/SF2 is required for cell viability. , 1996, Genes & development.
[92] J. Manley,et al. Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[93] J. Manley,et al. Phosphorylation of the ASF/SF2 RS domain affects both protein-protein and protein-RNA interactions and is necessary for splicing. , 1997, Genes & development.
[94] M. Green,et al. Pre-mRNA splicing of IgM exons M1 and M2 is directed by a juxtaposed splicing enhancer and inhibitor. , 1999, Genes & development.
[95] T. Nilsen. The spliceosome: no assembly required? , 2002, Molecular cell.
[96] A. Krainer,et al. A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm. , 1998, Genes & development.
[97] J. Tazi,et al. Phosphorylation-dependent control of the pre-mRNA splicing machinery. , 2003, Progress in molecular and subcellular biology.
[98] J. Valcárcel,et al. The SR protein family: pleiotropic functions in pre-mRNA splicing. , 1996, Trends in biochemical sciences.
[99] S Cusack,et al. Crystal structure of the human nuclear cap binding complex. , 2001, Molecular cell.
[100] Xiang-Dong Fu,et al. The superfamily of arginine/serine-rich splicing factors. , 1995, RNA.
[101] B R Franza,et al. Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors. , 1998, RNA.
[102] M. Hentze,et al. Molecular mechanisms of translational control , 2004, Nature Reviews Molecular Cell Biology.
[103] P. Grabowski,et al. Coordinate repression of a trio of neuron-specific splicing events by the splicing regulator PTB. , 1999, RNA.
[104] Michael R. Green,et al. Arginine-serine-rich domains bound at splicing enhancers contact the branchpoint to promote prespliceosome assembly. , 2004, Molecular cell.
[105] D. Gatfield,et al. A novel mode of RBD-protein recognition in the Y14–Mago complex , 2003, Nature Structural Biology.
[106] Michael R. Green,et al. U2AF homology motifs: protein recognition in the RRM world. , 2004, Genes & development.
[107] G. C. Roberts,et al. Smooth muscle‐specific switching of alpha‐tropomyosin mutually exclusive exon selection by specific inhibition of the strong default exon. , 1994, The EMBO journal.
[108] Ravinder Singh,et al. Drosophila polypyrimidine‐tract binding protein (PTB) functions specifically in the male germline , 2003, The EMBO journal.
[109] D. Rio,et al. Soma-specific expression and cloning of PSI, a negative regulator of P element pre-mRNA splicing. , 1995, Genes & development.
[110] N. Grishin,et al. KH domain: one motif, two folds. , 2001, Nucleic acids research.
[111] Bosiljka Tasic,et al. Alternative pre-mRNA splicing and proteome expansion in metazoans , 2002, Nature.
[112] Kazuki Kurimoto,et al. Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein , 1999, Nature.
[113] A. Krainer,et al. Selection of Alternative 5′ Splice Sites: Role of U1 snRNP and Models for the Antagonistic Effects of SF2/ASF and hnRNP A1 , 2000, Molecular and Cellular Biology.
[114] A. Krainer,et al. Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors. , 1994, Science.
[115] J. Valcárcel,et al. Splicing regulation in Drosophila sex determination. , 2003, Progress in molecular and subcellular biology.
[116] Philip R. Evans,et al. Crystal structure of the spliceosomal U2B″–U2A′ protein complex bound to a fragment of U2 small nuclear RNA , 1998, Nature.
[117] J. Castle,et al. Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays , 2003, Science.