Interactions between PBEF and oxidative stress proteins – A potential new mechanism underlying PBEF in the pathogenesis of acute lung injury

[1]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[2]  G. Rubenfeld,et al.  Epidemiology and outcomes of acute lung injury. , 2007, Chest.

[3]  S. Dudek,et al.  Cytoskeletal regulation of pulmonary vascular permeability. , 2001, Journal of applied physiology.

[4]  M. Sanner,et al.  Reduced surface: an efficient way to compute molecular surfaces. , 1996, Biopolymers.

[5]  M. Vidal,et al.  Interactome: gateway into systems biology. , 2005, Human molecular genetics.

[6]  Z. Weng,et al.  A novel shape complementarity scoring function for protein‐protein docking , 2003, Proteins.

[7]  J. Khan,et al.  Molecular basis for the inhibition of human NMPRTase, a novel target for anticancer agents , 2006, Nature Structural &Molecular Biology.

[8]  T L Petty,et al.  Acute respiratory distress in adults. , 1967, Lancet.

[9]  D. Karp,et al.  Gamma-glutamyl transpeptidase activity alters the T cell response to oxidative stress and Fas-induced apoptosis. , 2003, International immunology.

[10]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[11]  B. Simon,et al.  Molecular Cloning and Characterization of Canine Pre-B-Cell Colony-Enhancing Factor , 2005, Biochemical Genetics.

[12]  Jennifer L. Turi,et al.  Iron homeostasis in the lung. , 2006, Biological research.

[13]  A. Ohta,et al.  Analysis of A2a receptor-deficient mice reveals no significant compensatory increases in the expression of A2b, A1, and A3 adenosine receptors in lymphoid organs. , 2003, Biochemical pharmacology.

[14]  F. Sanger,et al.  Sequence and organization of the human mitochondrial genome , 1981, Nature.

[15]  P. Parsons,et al.  Serum ferritin as a predictor of the acute respiratory distress syndrome. , 1997, American journal of respiratory and critical care medicine.

[16]  J. Eaton,et al.  Heme, heme oxygenase and ferritin in vascular endothelial cell injury. , 2005, Molecular nutrition & food research.

[17]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[18]  S. Ye,et al.  Pre-B-cell-colony-enhancing factor is critically involved in thrombin-induced lung endothelial cell barrier dysregulation. , 2005, Microvascular research.

[19]  C. Waters,et al.  Cyclic mechanical strain increases reactive oxygen species production in pulmonary epithelial cells. , 2005, American journal of physiology. Lung cellular and molecular physiology.

[20]  S. Dudek,et al.  Regulation of sphingosine 1‐phosphate‐induced endothelial cytoskeletal rearrangement and barrier enhancement by S1P1 receptor, PI3 kinase, Tiam1/Rac1, and α‐actinin , 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[21]  D. Lipman,et al.  Rapid and sensitive protein similarity searches. , 1985, Science.

[22]  D. Wallace.  Mitochondrial diseases in man and mouse. , 1999, Science.

[23]  A. Markham,et al.  Genomic organization of the human ubiquitin-conjugating enzyme gene, UBE2L6 on chromosome 11q12 , 2000, Cytogenetic and Genome Research.

[24]  T. Standiford,et al.  Pre-B-cell colony-enhancing factor as a potential novel biomarker in acute lung injury. , 2005, American journal of respiratory and critical care medicine.

[25]  S. Fields,et al.  A novel genetic system to detect protein–protein interactions , 1989, Nature.

[26]  A. Sali,et al.  Comparative protein structure modeling of genes and genomes. , 2000, Annual review of biophysics and biomolecular structure.

[27]  G. Stark,et al.  Molecular analysis of a human interferon-inducible gene family. , 1991, European journal of biochemistry.

[28]  A. Verin,et al.  Potential Protein Partners for the Human TIMAP Revealed by Bacterial Two-hybrid Screening , 2006, Molecular Biology Reports.

[29]  Y. Hattori,et al.  Heteroplasmic mitochondrial DNA 3310 mutation in NADH dehydrogenase subunit 1 associated with type 2 diabetes, hypertrophic cardiomyopathy, and mental retardation in a single patient. , 2003, Diabetes care.

[30]  J. Huot,et al.  Dysregulation of the endothelial cellular response to oxidative stress in cancer , 2006, Molecular carcinogenesis.

[31]  David L. Wheeler,et al.  GenBank , 2015, Nucleic Acids Res..

[32]  Arthur S Slutsky,et al.  Role of oxidative stress in experimental sepsis and multisystem organ dysfunction , 2006, Free radical research.