Detection of Hepatitis B Virus Deoxyribonucleic Acid Based on Gold Nanoparticle Probe Chip

Abstract Nanoparticle-based bio-barcode amplification (BCA) approach was developed for the sensitive detection of hepatitis B virus (HBV) DNA. The BCA approach employed two sets of particles: (1) two-component oligonucleotide-modified gold nanoparticles (AuNPs): one oligonucleotide probe called signal probe (barcode DNA) is partially complementary with the target sequence of HBV DNA, and another one called detection probe is partially complementary with the signal probe; (2) single component oligonucleotide-modified magnetic microparticles (MMPs). In the presence of the target molecule, the gold nanoparticles and magnetic particles formed sandwich hybrids. Along with the isolation of sandwiched hybrids from the sample using a magnet, nonspecific-bound gold nanoparticles were removed, ensuring that only target-bound gold nanoparticles were collected. Subsequently, the bar-code DNAs were dehybridized from the gold nanoparticle by using the dithiothreitol (DTT). The detection probe with AuNP mixed with bar-code DNA solution was then added to a bar-code capture DNA-modified chip, and the spots on chip were labeled with bar-code DNA strands and AuNP probes. Finally, the scanometric detection of silver stain was introduced to further amplify the signal. The results showed that it was possible in a format that offers low fM (10−15 M) sensitivity in the detection of HBV DNA sample, and there is a good linear relationship between target concentration and spot intensity on chip. The detection of the assay could be fulfilled within 1.5 h. The method could provide a new generation of diagnostic assays for HBV or the other infectious disease.

[1]  Chunhai Fan,et al.  Sequence-specific detection of femtomolar DNA via a chronocoulometric DNA sensor (CDS): effects of nanoparticle-mediated amplification and nanoscale control of DNA assembly at electrodes. , 2006, Journal of the American Chemical Society.

[2]  Mizuo Maeda,et al.  Colorimetric Biosensors Based on DNA-nanoparticle Conjugates , 2007, Analytical sciences : the international journal of the Japan Society for Analytical Chemistry.

[3]  S. Tokonami,et al.  Review: micro- and nanosized molecularly imprinted polymers for high-throughput analytical applications. , 2009, Analytica chimica acta.

[4]  P. Qin,et al.  Electrochemical biosensor for the detection of cauliflower mosaic virus 35 S gene sequences using lead sulfide nanoparticles as oligonucleotide labels. , 2008, Analytical biochemistry.

[5]  S. Koizumi Application of DNA Microarrays in Occupational Health Research , 2004, Journal of occupational health.

[6]  F. Christians,et al.  High-density genechip oligonucleotide probe arrays. , 2002, Advances in biochemical engineering/biotechnology.

[7]  Sang Jun Sim,et al.  Homogenous growth of gold nanocrystals for quantification of PSA protein biomarker. , 2009, Biosensors & bioelectronics.

[8]  S. P. Fodor,et al.  Multiplexed biochemical assays with biological chips , 1993, Nature.

[9]  Chunhai Fan,et al.  A gold nanoparticle-based chronocoulometric DNA sensor for amplified detection of DNA , 2007, Nature Protocols.

[10]  Chad A Mirkin,et al.  Bio-bar-code-based DNA detection with PCR-like sensitivity. , 2004, Journal of the American Chemical Society.

[11]  Tian Chen,et al.  Quantification of microRNA by gold nanoparticle probes. , 2008, Analytical biochemistry.

[12]  G. Yao Entecavir is a potent anti-HBV drug superior to lamivudine: experience from clinical trials in China. , 2007, The Journal of antimicrobial chemotherapy.

[13]  S. Kingsmore,et al.  Combining nucleic acid amplification and detection. , 2001, Current opinion in biotechnology.

[14]  Lei Guo,et al.  Cross-platform comparison of SYBR® Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study , 2008, BMC Genomics.

[15]  Ruengpung Sutthent,et al.  p24 Antigen Detection Assay Modified with a Booster Step for Diagnosis and Monitoring of Human Immunodeficiency Virus Type 1 Infection , 2003, Journal of Clinical Microbiology.

[16]  Ronald W. Davis,et al.  Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.