Isolation of salt tolerant endophytic and rhizospheric bacteria by natural selection and screening for promising plant growth-promoting rhizobacteria (PGPR) and growth vigour in tomato under sodic environment

The importance of plant growth promoting rhizobacteria in growth promotion and their ability to elicit ‘induced systemic tolerance’ against abiotic stresses has been documented. However, the performance of these microbes under various abiotic stresses especially saline-sodic conditions will be of great importance in the current agricultural scenario. In this study, we isolated 16 rhizobacteria through natural selection from saline sodic soils, and characterized them using morphological and biochemical parameters. These bacteria were assessed for their plant growth-promoting rhizobacteria (PGPR) traits like indole-3-acetic acid (IAA) production, ammonia and hydrogen cyanide (HCN) production, phosphate solubilization, etc. Furthermore, they were screened for in-vitro salt (NaCl) tolerance and Na+ uptake pattern, where two stress tolerant rhizobacteria B-1 and B-3 identified as Bacillus pumilus and Bacillus subtilis showed all PGPR traits with tolerance to salinity. These isolates also elicited significantly higher vigor index in tomato seedlings grown in pot culture experiments under saline sodic soils of pH 9.35 and EC 4.2.   Key words:  Rhizobacteria, salt tolerant, natural selection, PGPR.

[1]  S. Sankararaman,et al.  Bacillus cereus. , 2013, Pediatrics in review.

[2]  Babu Joseph,et al.  Characterization of plant growth promoting rhizobacteria associated with chickpea (Cicer arietinum L.) , 2012 .

[3]  M. U. Rani,et al.  Screening of rhizobacteria containing plant growth promoting (PGPR) traits in rhizosphere soils and their role in enhancing growth of pigeon pea , 2012 .

[4]  D. Egamberdieva Pseudomonas chlororaphis: a salt-tolerant bacterial inoculant for plant growth stimulation under saline soil conditions , 2012, Acta Physiologiae Plantarum.

[5]  G. Reddy,et al.  Bacillus cereus and Enterobacter cancerogenus screened for their efficient plant growth promoting traits rhizobacteria (PGPR) and antagonistic traits among sixteen bacterial isolates from rhizospheric soils of Pigeon Pea , 2011 .

[6]  M. Saraf,et al.  Salinity-resistant plant growth promoting rhizobacteria ameliorates sodium chloride stress on tomato plants , 2010 .

[7]  J. Walton,et al.  Improving Enzymes for Biomass Conversion: A Basic Research Perspective , 2010, BioEnergy Research.

[8]  D. Singh,et al.  Genetic Diversity of Plant Growth Promoting Rhizobacteria Isolated from Rhizospheric Soil of Wheat Under Saline Condition , 2009, Current Microbiology.

[9]  K. Islam,et al.  Salt‐Tolerant Rhizobacteria: Plant Growth Promoting Traits and Physiological Characterization Within Ecologically Stressed Environments , 2008 .

[10]  Almas Zaidi,et al.  Effect of metal tolerant plant growth promoting Bradyrhizobium sp. (vigna) on growth, symbiosis, seed yield and metal uptake by greengram plants. , 2007, Chemosphere.

[11]  G. Holguin,et al.  Azospirillum-plant relationships: physiological, molecular, agricultural, and environmental advances (1997-2003). , 2004, Canadian journal of microbiology.

[12]  B. Glick,et al.  Plant growth-promoting bacteria confer resistance in tomato plants to salt stress. , 2004, Plant physiology and biochemistry : PPB.

[13]  B. Lugtenberg,et al.  Rhizosphere Management: Microbial Manipulation for Biocontrol , 2004 .

[14]  Bernard R. Glick,et al.  PLANT GROWTH-PROMOTING BACTERIA THAT CONFER RESISTANCE TO WATER STRESS IN TOMATOES AND PEPPERS , 2004 .

[15]  B. Touraine,et al.  Plant growth-promoting bacteria and nitrate availability: impacts on root development and nitrate uptake. , 2003, Journal of experimental botany.

[16]  M. J. Harrison,et al.  A Phosphate Transporter from Medicago truncatula Involved in the Acquisition of Phosphate Released by Arbuscular Mycorrhizal Fungi Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004861. , 2002, The Plant Cell Online.

[17]  P. Poole,et al.  Role of soil microorganisms in improving P nutrition of plants , 2002, Plant and Soil.

[18]  M. Qadir,et al.  Degradation processes and nutrient constraints in sodic soils , 2002 .

[19]  R. Gupta,et al.  SALINITY BUILD-UP AND CHANGES IN THE RICE–WHEAT SYSTEM OF THE INDO-GANGETIC PLAINS , 2000, Experimental Agriculture.

[20]  Braverman,et al.  Evidence for mutualism between a plant growing in a phosphate-limited desert environment and a mineral phosphate solubilizing (MPS) rhizobacterium. , 1999, FEMS microbiology ecology.

[21]  B. Duffy,et al.  Environmental Factors Modulating Antibiotic and Siderophore Biosynthesis by Pseudomonas fluorescensBiocontrol Strains , 1999, Applied and Environmental Microbiology.

[22]  W. Mahaffee,et al.  Bacterial endophytes in agricultural crops , 1997 .

[23]  J. Loper,et al.  Availability of iron to Pseudomonas fluorescens in rhizosphere and bulk soil evaluated with an ice nucleation reporter gene , 1997, Applied and environmental microbiology.

[24]  J. Borneman,et al.  Molecular microbial diversity of an agricultural soil in Wisconsin , 1996, Applied and environmental microbiology.

[25]  Bernard R. Glick,et al.  Isolation and Characterization of Mutants of the Plant Growth-Promoting Rhizobacterium Pseudomonas putida GR12-2 That Overproduce Indoleacetic Acid , 1996, Current Microbiology.

[26]  Bernard R. Glick,et al.  The enhancement of plant growth by free-living bacteria , 1995 .

[27]  W. Verstraete,et al.  Survival and root colonization of mutants of plant growth‐promoting pseudomonads affected in siderophore biosynthesis or regulation of siderophore production , 1992 .

[28]  R. Bostock,et al.  Rapid In Situ Assay for Indoleacetic Acid Production by Bacteria Immobilized on a Nitrocellulose Membrane , 1991, Applied and environmental microbiology.

[29]  P. Bakker,et al.  Beneficial and deleterious effects of HCN-producing pseudomonads on rhizosphere interactions , 1990, Plant and Soil.

[30]  Joseph W. Kloepper,et al.  Free-living bacterial inocula for enhancing crop productivity , 1989 .

[31]  James D. Anderson,et al.  Vigor Determination in Soybean Seed by Multiple Criteria 1 , 1973 .

[32]  A. G. Norman,et al.  Soil and Fertilizer Phosphorus in Crop Nutrition , 1954 .

[33]  H. Lorck Production of Hydrocyanic Acid by Bacteria , 1948 .

[34]  K. Dhama,et al.  Management of sub-soil sodicity for sustainable banana production in sodic soil – An approach. , 2013 .

[35]  C. Nellemann,et al.  The environmental food crisis : the environment's role in averting future food crises , 2009 .

[36]  M. Cha,et al.  Solubilization of insoluble inorganic phosphates by a novel salt- and pH-tolerant Pantoea agglomerans R-42 isolated from soybean rhizosphere. , 2006, Bioresource technology.

[37]  Johanna Sjöberg,et al.  Arbuscular mycorrhizal fungi , 2005 .

[38]  B. Clarke,et al.  Evaluation of bacterial antagonists for reduction of summer patch symptoms in Kentucky bluegrass , 1996 .

[39]  Wang Shouhua,et al.  Screening of rhizobacteria antagonistic to plant parasitic nematodes. , 1995 .

[40]  J. Neilands,et al.  Universal chemical assay for the detection and determination of siderophores. , 1987, Analytical biochemistry.

[41]  U. Usa Diagnosis and improvement of saline and alkali soils. , 1954 .