Probing Host Pathogen Cross-Talk by Transcriptional Profiling of Both Mycobacterium tuberculosis and Infected Human Dendritic Cells and Macrophages
暂无分享,去创建一个
Philip D. Butcher | Neil G. Stoker | Simon J. Waddell | Mattia Pelizzola | Brigitte Gicquel | M. Pelizzola | M. Foti | S. Waddell | P. Butcher | A. Mortellaro | L. Tailleux | P. Castagnoli | B. Gicquel | O. Neyrolles | N. Stoker | Mike Withers | Olivier Neyrolles | A. Tanne | Ludovic Tailleux | Maria Foti | Alessandra Mortellaro | Michael Withers | Antoine Tanne | Paola Ricciardi Castagnoli | Mattia Pelizzola
[1] S. Johnston,et al. Mycobacterial Bacilli Are Metabolically Active during Chronic Tuberculosis in Murine Lungs: Insights from Genome-Wide Transcriptional Profiling , 2007, Journal of bacteriology.
[2] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[3] Gordon K Smyth,et al. Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2004, Statistical applications in genetics and molecular biology.
[4] R. Modlin,et al. Down-regulation of CD1 on antigen-presenting cells by infection with Mycobacterium tuberculosis. , 1998, Journal of immunology.
[5] F. Movahedzadeh,et al. Deletion of the Mycobacterium tuberculosis α-Crystallin-Like hspX Gene Causes Increased Bacterial Growth In Vivo , 2006, Infection and Immunity.
[6] Shizuo Akira,et al. Innate immune recognition of viral infection , 2006, Nature Immunology.
[7] Ash A. Alizadeh,et al. Stereotyped and specific gene expression programs in human innate immune responses to bacteria , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[8] Martin Tompa,et al. Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis , 2003, Molecular microbiology.
[9] W. Goebel,et al. Listeria monocytogenes-Infected Human Dendritic Cells: Uptake and Host Cell Response , 2000, Infection and Immunity.
[10] T. Gingeras,et al. Reprogramming of the Macrophage Transcriptome in Response to Interferon-γ and Mycobacterium tuberculosis , 2001, The Journal of experimental medicine.
[11] Vojo Deretic,et al. Cell biology of mycobacterium tuberculosis phagosome. , 2004, Annual review of cell and developmental biology.
[12] Simon C Watkins,et al. Activation of human dendritic cells following infection with Mycobacterium tuberculosis. , 1997, Journal of immunology.
[13] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[14] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[15] Norman Pavelka,et al. AMDA: an R package for the automated microarray data analysis , 2006, BMC Bioinformatics.
[16] Yang Liu,et al. Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages , 2003, The Journal of experimental medicine.
[17] S. Waddell,et al. Microarray analysis of whole genome expression of intracellular Mycobacterium tuberculosis. , 2007, Current molecular medicine.
[18] P. Schlesinger,et al. Lack of acidification in Mycobacterium phagosomes produced by exclusion of the vesicular proton-ATPase. , 1994, Science.
[19] E. Lander,et al. Human macrophage activation programs induced by bacterial pathogens , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[20] B. Bonde,et al. Transcriptomic Analysis Identifies Growth Rate Modulation as a Component of the Adaptation of Mycobacteria to Survival inside the Macrophage , 2007, Journal of bacteriology.
[21] Damien Chaussabel,et al. Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. , 2003, Blood.
[22] Brunero Liseo,et al. Profiling of Mycobacterium tuberculosis gene expression during human macrophage infection: upregulation of the alternative sigma factor G, a group of transcriptional regulators, and proteins with unknown function. , 2006, Research in microbiology.
[23] Maria L. Gennaro,et al. Changes in energy metabolism of Mycobacterium tuberculosis in mouse lung and under in vitro conditions affecting aerobic respiration , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[24] M. Horwitz,et al. All four Mycobacterium tuberculosis glnA genes encode glutamine synthetase activities but only GlnA1 is abundantly expressed and essential for bacterial homeostasis , 2005, Molecular microbiology.
[25] D. Eisenberg,et al. Unique Transcriptome Signature of Mycobacterium tuberculosis in Pulmonary Tuberculosis , 2006, Infection and Immunity.
[26] N. Boéchat,et al. Inducible nitric oxide synthase in pulmonary alveolar macrophages from patients with tuberculosis , 1996, The Journal of experimental medicine.
[27] J. Johndrow,et al. Anti-inflammatory actions of lipoxin A4 and aspirin-triggered lipoxin are SOCS-2 dependent , 2006, Nature Medicine.
[28] D. Crane,et al. Stationary phase-associated protein expression in Mycobacterium tuberculosis: function of the mycobacterial alpha-crystallin homolog , 1996, Journal of bacteriology.
[29] F. Geissmann,et al. Dendritic cells are early cellular targets of Listeria monocytogenes after intestinal delivery and are involved in bacterial spread in the host , 2001, Cellular microbiology.
[30] J. Sirard,et al. Entry and survival of Salmonella typhimurium in dendritic cells and presentation of recombinant antigens do not require macrophage-specific virulence factors. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[31] W. Bishai,et al. Dormancy Phenotype Displayed by Extracellular Mycobacterium tuberculosis within Artificial Granulomas in Mice , 2004, The Journal of experimental medicine.
[32] Masato Kubo,et al. SOCS proteins, cytokine signalling and immune regulation , 2007, Nature Reviews Immunology.
[33] D. Werling,et al. Differential production of cytokines, reactive oxygen and nitrogen by bovine macrophages and dendritic cells stimulated with Toll‐like receptor agonists , 2002, Immunology.
[34] B. Gicquel,et al. Identification of a virulence gene cluster of Mycobacterium tuberculosis by signature‐tagged transposon mutagenesis , 1999, Molecular microbiology.
[35] S. Waddell,et al. RNA profiling in host-pathogen interactions. , 2007, Current opinion in microbiology.
[36] Rick Lyons,et al. The temporal expression profile of Mycobacterium tuberculosis infection in mice. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[37] Sabine Ehrt,et al. Expression profiling of host pathogen interactions: how Mycobacterium tuberculosis and the macrophage adapt to one another. , 2006, Microbes and infection.
[38] L. Fiette,et al. Dendritic Cells Are Host Cells for Mycobacteria In Vivo That Trigger Innate and Acquired Immunity1 , 2002, The Journal of Immunology.
[39] E. Hiltbold,et al. Differential susceptibility of bone marrow‐derived dendritic cells and macrophages to productive infection with Listeria monocytogenes , 2007, Cellular microbiology.
[40] J. Betts,et al. Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling , 2002, Molecular microbiology.
[41] B. Barrell,et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence , 1998, Nature.
[42] M. Dinauer,et al. Rac GTPase Isoform-specific Regulation of NADPH Oxidase and Chemotaxis in Murine Neutrophils in Vivo , 2005, Journal of Biological Chemistry.
[43] L. Dijkhuizen,et al. A gene cluster encoding cholesterol catabolism in a soil actinomycete provides insight into Mycobacterium tuberculosis survival in macrophages , 2007, Proceedings of the National Academy of Sciences.
[44] Tanya Parish,et al. glnE Is an Essential Gene inMycobacterium tuberculosis , 2000, Journal of bacteriology.
[45] S. Falkow,et al. Differential trafficking of live and dead Mycobacterium marinum organisms in macrophages , 1997, Infection and immunity.
[46] M. Horwitz,et al. Glutamine Synthetase GlnA1 Is Essential for Growth of Mycobacterium tuberculosis in Human THP-1 Macrophages and Guinea Pigs , 2003, Infection and Immunity.
[47] P. Ricciardi-Castagnoli,et al. Interpretation of the complexity of innate immune responses by functional genomics , 2002, Nature Reviews Immunology.
[48] G. Raposo,et al. NOX2 Controls Phagosomal pH to Regulate Antigen Processing during Crosspresentation by Dendritic Cells , 2006, Cell.
[49] James C. Sacchettini,et al. Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase , 2000, Nature.
[50] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[51] E. Werner. GTPases and reactive oxygen species: switches for killing and signaling , 2004, Journal of Cell Science.
[52] Lorenz Wernisch,et al. The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis. , 2004, Tuberculosis.
[53] M. Kanehisa. A database for post-genome analysis. , 1997, Trends in genetics : TIG.
[54] L. Bermudez,et al. Interaction of Mycobacterium avium with Human Monocyte-Derived Dendritic Cells , 2000, Infection and Immunity.
[55] Christian Cambillau,et al. LppX is a lipoprotein required for the translocation of phthiocerol dimycocerosates to the surface of Mycobacterium tuberculosis , 2006, The EMBO journal.
[56] Rab9 functions in transport between late endosomes and the trans Golgi network. , 1993, The EMBO journal.
[57] David G. Russell,et al. Mycobacterium tuberculosis: here today, and here tomorrow , 2001, Nature Reviews Molecular Cell Biology.
[58] D. Sherman,et al. Two Sensor Kinases Contribute to the Hypoxic Response of Mycobacterium tuberculosis* , 2004, Journal of Biological Chemistry.
[59] W. Jacobs,et al. The effects of reactive nitrogen intermediates on gene expression in Mycobacterium tuberculosis , 2003, Cellular microbiology.
[60] T. Gingeras,et al. Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase. , 2001, The Journal of experimental medicine.
[61] K. Chung,et al. Increased exhaled nitric oxide in active pulmonary tuberculosis due to inducible NO synthase upregulation in alveolar macrophages , 2002 .
[62] Lorenz Wernisch,et al. Dissection of the heat-shock response in Mycobacterium tuberculosis using mutants and microarrays. , 2002, Microbiology.
[63] P. Butcher,et al. Gene expression during host—pathogen interactions: Approaches to bacterial mRNA extraction and labelling for microarray analysis , 2002 .
[64] Ben Sidders,et al. A highly conserved transcriptional repressor controls a large regulon involved in lipid degradation in Mycobacterium smegmatis and Mycobacterium tuberculosis , 2007, Molecular microbiology.
[65] Gene Ontology Consortium. The Gene Ontology (GO) database and informatics resource , 2003 .
[66] A. Steyn,et al. Mycobacterium tuberculosis DosS is a redox sensor and DosT is a hypoxia sensor , 2007, Proceedings of the National Academy of Sciences.
[67] Jacques Corbeil,et al. Gene expression profiling detects patterns of human macrophage responses following Mycobacterium tuberculosis infection. , 2003, FEMS immunology and medical microbiology.
[68] C. Nathan,et al. Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[69] Ilkka Julkunen,et al. Infection of Human Macrophages and Dendritic Cells with Mycobacterium tuberculosis Induces a Differential Cytokine Gene Expression That Modulates T Cell Response1 , 2001, The Journal of Immunology.
[70] Dirk Schnappinger,et al. Inhibition of Respiration by Nitric Oxide Induces a Mycobacterium tuberculosis Dormancy Program , 2003, The Journal of experimental medicine.
[71] Gordon K. Smyth,et al. Use of within-array replicate spots for assessing differential expression in microarray experiments , 2005, Bioinform..
[72] L Wernisch,et al. The Mycobacterium tuberculosis dosRS two-component system is induced by multiple stresses. , 2004, Tuberculosis.
[73] J. Abastado,et al. Constrained Intracellular Survival of Mycobacterium tuberculosis in Human Dendritic Cells 1 , 2003, The Journal of Immunology.
[74] T. Dick,et al. Increased alanine dehydrogenase activity during dormancy in Mycobacterium smegmatis. , 1998, FEMS microbiology letters.
[75] S. Howell,et al. Changes in gene expression in macrophages infected with Mycobacterium tuberculosis: a combined transcriptomic and proteomic approach , 2001, Immunology.