Rfam 12.0: updates to the RNA families database
暂无分享,去创建一个
Robert D. Finn | Sean R. Eddy | Alex Bateman | Ruth Y. Eberhardt | Paul P. Gardner | Eric P. Nawrocki | Sarah W. Burge | Jennifer Daub | Evan W. Floden | Thomas A. Jones | John G. Tate | S. Eddy | T. A. Jones | R. Finn | J. Tate | A. Bateman | J. Daub | P. Gardner | R. Eberhardt | Evan W. Floden | R. Y. Eberhardt | Evan W. Floden
[1] Sean R. Eddy,et al. Computational identification of functional RNA homologs in metagenomic data , 2013, RNA biology.
[2] Eric P. Nawrocki,et al. Annotating functional RNAs in genomes using Infernal. , 2014, Methods in molecular biology.
[3] Robert D. Finn,et al. Rfam: Wikipedia, clans and the “decimal” release , 2010, Nucleic Acids Res..
[4] Jan Gorodkin,et al. Structured RNAs and synteny regions in the pig genome , 2014, BMC Genomics.
[5] Justin T. Roberts,et al. Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences , 2014, Mobile genetic elements.
[6] Lisa Maria Mustachio,et al. The Vibrio cholerae Mannitol Transporter Is Regulated Posttranscriptionally by the MtlS Small Regulatory RNA , 2011, Journal of bacteriology.
[7] E. Wagner,et al. A Repeated GGA Motif Is Critical for the Activity and Stability of the Riboregulator RsmY of Pseudomonas fluorescens* , 2004, Journal of Biological Chemistry.
[8] Ni Li,et al. Gene Ontology Annotations and Resources , 2012, Nucleic Acids Res..
[9] Daniel R. Zerbino,et al. Ensembl 2014 , 2013, Nucleic Acids Res..
[10] D Gautheret,et al. A major family of motifs involving G.A mismatches in ribosomal RNA. , 1994, Journal of molecular biology.
[11] Matthew Fraser,et al. EBI metagenomics—a new resource for the analysis and archiving of metagenomic data , 2013, Nucleic Acids Res..
[12] D A Kramerov,et al. Origin and evolution of SINEs in eukaryotic genomes , 2011, Heredity.
[13] D. Lilley,et al. A structural database for k-turn motifs in RNA. , 2010, RNA.
[14] Jan Gorodkin,et al. RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods , 2014, Methods in Molecular Biology.
[15] Sean R. Eddy,et al. Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..
[16] Jamie J. Cannone,et al. Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction , 2004, BMC Bioinformatics.
[17] D. Giedroc,et al. The RNA Molecule CsrB Binds to the Global Regulatory Protein CsrA and Antagonizes Its Activity in Escherichia coli * , 1997, The Journal of Biological Chemistry.
[18] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[19] A. Weiner,et al. Human genes and pseudogenes for the 7SL RNA component of signal recognition particle. , 1984, The EMBO journal.
[20] Sean R. Eddy,et al. Local RNA structure alignment with incomplete sequence , 2009, Bioinform..
[21] P. Moore,et al. The sarcin/ricin loop, a modular RNA. , 1995, Journal of molecular biology.
[22] Sam Griffiths-Jones,et al. Annotating noncoding RNA genes. , 2007, Annual review of genomics and human genetics.
[23] J. Mattick,et al. Long non-coding RNAs: insights into functions , 2009, Nature Reviews Genetics.
[24] Fredrik H. Karlsson,et al. Gut metagenome in European women with normal, impaired and diabetic glucose control , 2013, Nature.
[25] Peter F Stadler,et al. Fast and reliable prediction of noncoding RNAs , 2005, Proc. Natl. Acad. Sci. USA.
[26] Yu Zhang,et al. Miniature Inverted–Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa , 2011, Molecular biology and evolution.
[27] L. Van Melderen,et al. Post-transcriptional global regulation by CsrA in bacteria , 2010, Cellular and Molecular Life Sciences.
[28] J. Tate,et al. The RNA WikiProject: community annotation of RNA families. , 2008, RNA.
[29] Xiu Lin,et al. Facing growth in the European Nucleotide Archive , 2012, Nucleic Acids Res..
[30] Sean R. Eddy,et al. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .
[31] Dan M. Bolser,et al. Ensembl Genomes 2013: scaling up access to genome-wide data , 2013, Nucleic Acids Res..
[32] Sean R. Eddy,et al. nhmmer: DNA homology search with profile HMMs , 2013, Bioinform..
[33] Ana Kozomara,et al. miRBase: annotating high confidence microRNAs using deep sequencing data , 2013, Nucleic Acids Res..
[34] Sean R. Eddy,et al. Infernal 1.1: 100-fold faster RNA homology searches , 2013, Bioinform..
[35] M. Rasis,et al. The LetA‐RsmYZ‐CsrA regulatory cascade, together with RpoS and PmrA, post‐transcriptionally regulates stationary phase activation of Legionella pneumophila Icm/Dot effectors , 2009, Molecular microbiology.
[36] Jonathan P. Bollback,et al. Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA. , 2006, Genome research.
[37] C. Pichon,et al. The AfaR small RNA controls expression of the AfaD-VIII invasin in pathogenic Escherichia coli strains , 2013, Nucleic acids research.