Inhibition of retinoic acid signaling in proximal tubular epithelial cells protects against acute kidney injury

Retinoic acid receptor (RAR) signaling is essential for mammalian kidney development but, in the adult kidney, is restricted to occasional collecting duct epithelial cells. We now show that there is widespread reactivation of RAR signaling in proximal tubular epithelial cells (PTECs) in human sepsis-associated acute kidney injury (AKI) and in mouse models of AKI. Genetic inhibition of RAR signaling in PTECs protected against experimental AKI but was unexpectedly associated with increased expression of the PTEC injury marker Kim1. However, the protective effects of inhibiting PTEC RAR signaling were associated with increased Kim1-dependent apoptotic cell clearance, or efferocytosis, and this was associated with dedifferentiation, proliferation, and metabolic reprogramming of PTECs. These data demonstrate the functional role that reactivation of RAR signaling plays in regulating PTEC differentiation and function in human and experimental AKI.

[1]  Z. Pan,et al.  Retinoic Acid-Induced Regulation of Inflammatory Pathways Is a Potential Sepsis Treatment , 2023, Infection and immunity.

[2]  J. Christman,et al.  Zinc finger protein 24-dependent transcription factor SOX9 up-regulation protects tubular epithelial cells during acute kidney injury. , 2023, Kidney international.

[3]  J. Parant,et al.  A kidney resident macrophage subset is a candidate biomarker for renal cystic disease in preclinical models , 2022, Disease models & mechanisms.

[4]  A. Agarwal,et al.  Where Are They Now: Spatial and Molecular Diversity of Tissue-Resident Macrophages in the Kidney. , 2022, Seminars in nephrology.

[5]  K. Nath,et al.  Heme Proteins and Kidney Injury: Beyond Rhabdomyolysis , 2022, Kidney360.

[6]  Haojia Wu,et al.  Comprehensive single-cell transcriptional profiling defines shared and unique epithelial injury responses during kidney fibrosis. , 2022, Cell metabolism.

[7]  B. Obermayer,et al.  Single-cell transcriptomics reveals common epithelial response patterns in human acute kidney injury , 2022, Genome Medicine.

[8]  S. Waikar,et al.  Multimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progression , 2022, Nature Communications.

[9]  D. Malinoski,et al.  Molecular Mechanisms of Rhabdomyolysis-Induced Kidney Injury: From Bench to Bedside , 2022, Kidney international reports.

[10]  V. D’Agati,et al.  Integrated single cell sequencing and histopathological analyses reveal diverse injury and repair responses in a participant with acute kidney injury: A clinical-molecular-pathologic correlation. , 2022, Kidney international.

[11]  N. Hukriede,et al.  Experimental models of acute kidney injury for translational research , 2022, Nature Reviews Nephrology.

[12]  A. Pozzi,et al.  DDR1 contributes to kidney inflammation and fibrosis by promoting the phosphorylation of BCR and STAT3 , 2021, JCI insight.

[13]  N. Nin,et al.  Renal histopathology in critically ill patients with Septic Acute Kidney Injury(S-AKI). , 2021, Journal of critical care.

[14]  Z. Dong,et al.  Glucose Metabolism in Acute Kidney Injury and Kidney Repair , 2021, Frontiers in Medicine.

[15]  S. de Seigneux,et al.  Tubular Cell Glucose Metabolism Shift During Acute and Chronic Injuries , 2021, Frontiers in Medicine.

[16]  Yanqiao Zhang,et al.  Abstract MP01: Retinoic Acid Receptor Alpha (Rarα) In Macrophages Protects From Diet-induced Atherosclerosis In Mice , 2021, Arteriosclerosis, Thrombosis, and Vascular Biology.

[17]  J. McCormick,et al.  Cilastatin Ameliorates Rhabdomyolysis-induced AKI in Mice , 2021, Journal of the American Society of Nephrology : JASN.

[18]  Leslie S. Gewin,et al.  Sugar or Fat? Renal Tubular Metabolism Reviewed in Health and Disease , 2021, Nutrients.

[19]  S. Nigwekar,et al.  Acute Kidney Injury among Black Patients with Sickle Cell Trait and Sickle Cell Disease. , 2021, Clinical journal of the American Society of Nephrology : CJASN.

[20]  Anushya Muruganujan,et al.  The Gene Ontology resource: enriching a GOld mine , 2020, Nucleic Acids Res..

[21]  C. Kocks,et al.  Kidney Single-cell Transcriptomes Predict Spatial Corticomedullary Gene Expression and Tissue Osmolality Gradients. , 2020, Journal of the American Society of Nephrology : JASN.

[22]  Ji Young Kim,et al.  Involvement of the CDKL5-SOX9 signaling axis in rhabdomyolysis-associated acute kidney injury. , 2020, American journal of physiology. Renal physiology.

[23]  S. Cobb,et al.  A kinome-wide screen identifies a CDKL5-SOX9 regulatory axis in epithelial cell death and kidney injury , 2020, Nature Communications.

[24]  D. Green,et al.  The clearance of dead cells by efferocytosis , 2020, Nature Reviews Molecular Cell Biology.

[25]  V. Kerchberger,et al.  The Role of Circulating Cell-Free Hemoglobin in Sepsis-Associated Acute Kidney Injury. , 2020, Seminars in nephrology.

[26]  I. Tabas,et al.  Efferocytosis in health and disease , 2019, Nature Reviews Immunology.

[27]  M. Lalli,et al.  FOXM1 drives proximal tubule proliferation during repair from acute ischemic kidney injury. , 2019, The Journal of clinical investigation.

[28]  M. D. de Caestecker,et al.  Capillary rarefaction is more closely associated with CKD progression after cisplatin, rhabdomyolysis, and ischemia reperfusion-induced AKI than renal fibrosis. , 2019, American journal of physiology. Renal physiology.

[29]  E. Rhee,et al.  NAD+ homeostasis in renal health and disease , 2019, Nature Reviews Nephrology.

[30]  M. D. de Caestecker,et al.  Cell-free hemoglobin augments acute kidney injury during experimental sepsis. , 2019, American journal of physiology. Renal physiology.

[31]  M. D. de Caestecker,et al.  Long-term outcomes in mouse models of ischemia-reperfusion induced acute kidney injury. , 2019, American journal of physiology. Renal physiology.

[32]  D. Leaf,et al.  Iron Chelation as a Potential Therapeutic Strategy for AKI Prevention. , 2019, Journal of the American Society of Nephrology : JASN.

[33]  L. Boon,et al.  Limitations of neutrophil depletion by anti-Ly6G antibodies in two heterogenic immunological models. , 2019, Immunology letters.

[34]  A. McMahon,et al.  A late B lymphocyte action in dysfunctional tissue repair following kidney injury and transplantation , 2019, Nature Communications.

[35]  M. Mrug,et al.  Resident macrophages reprogram toward a developmental state after acute kidney injury. , 2019, JCI insight.

[36]  J. Bonventre,et al.  Kidney injury molecule-1 identifies antemortem injury in postmortem adult and fetal kidney. , 2018, American journal of physiology. Renal physiology.

[37]  A. McMahon,et al.  Transcriptional trajectories of human kidney injury progression. , 2018, JCI insight.

[38]  M. D. de Caestecker,et al.  Transdermal Measurement of Glomerular Filtration Rate in Mice , 2018, Journal of visualized experiments : JoVE.

[39]  M. Boerries,et al.  CXCL12 and MYC control energy metabolism to support adaptive responses after kidney injury , 2018, Nature Communications.

[40]  J. Kellum,et al.  Global epidemiology and outcomes of acute kidney injury , 2018, Nature Reviews Nephrology.

[41]  L. Gunaratnam,et al.  Donor kidney injury molecule‐1 promotes graft recovery by regulating systemic necroinflammation , 2018, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

[42]  G. Freeman,et al.  RGMb protects against acute kidney injury by inhibiting tubular cell necroptosis via an MLKL-dependent mechanism , 2018, Proceedings of the National Academy of Sciences.

[43]  John A Kellum,et al.  Clinical Decision Support for In-Hospital AKI. , 2017, Journal of the American Society of Nephrology : JASN.

[44]  O. Weisz,et al.  Receptor-Mediated Endocytosis in the Proximal Tubule. , 2017, Annual review of physiology.

[45]  L. Cantley,et al.  Macrophages in Renal Injury and Repair. , 2017, Annual review of physiology.

[46]  Wen-yan He,et al.  Necrosome core machinery: MLKL , 2016, Cellular and Molecular Life Sciences.

[47]  K. Reidy,et al.  Sox9-Positive Progenitor Cells Play a Key Role in Renal Tubule Epithelial Regeneration in Mice. , 2016, Cell reports.

[48]  N. Hukriede,et al.  Retinoic Acid Signaling Coordinates Macrophage-Dependent Injury and Repair after AKI. , 2016, Journal of the American Society of Nephrology : JASN.

[49]  Phillip G. Popovich,et al.  Novel Markers to Delineate Murine M1 and M2 Macrophages , 2015, PloS one.

[50]  F. Harrell,et al.  Bridging Translation by Improving Preclinical Study Design in AKI. , 2015, Journal of the American Society of Nephrology : JASN.

[51]  J. Bonventre,et al.  KIM‐1‐/TIM‐1‐mediated phagocytosis links ATG5‐/ULK1‐dependent clearance of apoptotic cells to antigen presentation , 2015, The EMBO journal.

[52]  A. McMahon,et al.  Sox9 Activation Highlights a Cellular Pathway of Renal Repair in the Acutely Injured Mammalian Kidney. , 2015, Cell reports.

[53]  Xiao-ming Meng,et al.  Macrophage Phenotype in Kidney Injury and Repair , 2015, Kidney Diseases.

[54]  J. Schanstra,et al.  Specific macrophage subtypes influence the progression of rhabdomyolysis-induced kidney injury. , 2015, Journal of the American Society of Nephrology : JASN.

[55]  L. Gunaratnam,et al.  Kidney injury molecule-1 protects against Gα12 activation and tissue damage in renal ischemia-reperfusion injury. , 2015, The American journal of pathology.

[56]  L. Hsiao,et al.  KIM-1-mediated phagocytosis reduces acute injury to the kidney. , 2015, The Journal of clinical investigation.

[57]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[58]  S. Bagshaw,et al.  Acute kidney injury—epidemiology, outcomes and economics , 2014, Nature Reviews Nephrology.

[59]  B. Mezquita,et al.  Unlocking Doors without Keys: Activation of Src by Truncated C-terminal Intracellular Receptor Tyrosine Kinases Lacking Tyrosine Kinase Activity , 2014, Cells.

[60]  W. van Biesen,et al.  A European Renal Best Practice (ERBP) position statement on the Kidney Disease Improving Global Outcomes (KDIGO) Clinical Practice Guidelines on Acute Kidney Injury: part 2: renal replacement therapy. , 2013, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[61]  I. Koulouridis,et al.  World incidence of AKI: a meta-analysis. , 2013, Clinical journal of the American Society of Nephrology : CJASN.

[62]  A. McMahon,et al.  Chronic epithelial kidney injury molecule-1 expression causes murine kidney fibrosis. , 2013, The Journal of clinical investigation.

[63]  M. D. de Caestecker,et al.  Ischemia-reperfusion model of acute kidney injury and post injury fibrosis in mice. , 2013, Journal of visualized experiments : JoVE.

[64]  Guangchuang Yu,et al.  clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.

[65]  T. Strom,et al.  Orphan nuclear receptor Nur77 promotes acute kidney injury and renal epithelial apoptosis. , 2012, Journal of the American Society of Nephrology : JASN.

[66]  J. He,et al.  Novel Retinoic Acid Receptor Alpha Agonists for Treatment of Kidney Disease , 2011, PloS one.

[67]  B. Molitoris,et al.  Pathophysiology of ischemic acute kidney injury , 2011, Nature Reviews Nephrology.

[68]  J. Holdway,et al.  Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration. , 2011, Developmental cell.

[69]  P. Scambler,et al.  Endogenous Retinoic Acid Activity in Principal Cells and Intercalated Cells of Mouse Collecting Duct System , 2011, PloS one.

[70]  Manuel T. Silva Secondary necrosis: The natural outcome of the complete apoptotic program , 2010, FEBS letters.

[71]  Shi-Xian Deng,et al.  The Ngal Reporter Mouse Detects the Response of the Kidney to Injury in Real Time , 2010, Nature Medicine.

[72]  E. Batourina,et al.  Non-cell-autonomous retinoid signaling is crucial for renal development , 2010, Development.

[73]  E. Poch,et al.  Rhabdomyolysis and acute kidney injury. , 2009, The New England journal of medicine.

[74]  M. Rosner,et al.  Acute kidney injury. , 2009, Current drug targets.

[75]  Davis J. McCarthy,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[76]  Robert L. Tanguay,et al.  Comparative Expression Profiling Reveals an Essential Role for Raldh2 in Epimorphic Regeneration* , 2009, The Journal of Biological Chemistry.

[77]  B. Molitoris,et al.  Illuminating mitochondrial function and dysfunction using multiphoton technology. , 2009, Journal of the American Society of Nephrology : JASN.

[78]  Joseph V Bonventre,et al.  Kidney injury molecule-1 is a phosphatidylserine receptor that confers a phagocytic phenotype on epithelial cells. , 2008, The Journal of clinical investigation.

[79]  P. Heeringa,et al.  Accumulation of Myeloperoxidase-Positive Neutrophils in Atherosclerotic Lesions in LDLR−/− Mice , 2007, Arteriosclerosis, thrombosis, and vascular biology.

[80]  M. C. V. D. Heuvel,et al.  Tubular kidney injury molecule‐1 (KIM‐1) in human renal disease , 2007, The Journal of pathology.

[81]  P. Chambon,et al.  Regulation of CD8+ T Lymphocyte Effector Function and Macrophage Inflammatory Cytokine Production by Retinoic Acid Receptor γ1 , 2007, The Journal of Immunology.

[82]  M. Ballow,et al.  Retinoic Acid Enhances the Production of IL-10 While Reducing the Synthesis of IL-12 and TNF-α from LPS-Stimulated Monocytes/Macrophages , 2007, Journal of Clinical Immunology.

[83]  E. Rankin,et al.  Renal cyst development in mice with conditional inactivation of the von Hippel-Lindau tumor suppressor. , 2006, Cancer research.

[84]  S. Shankland,et al.  ATRA induces podocyte differentiation and alters nephrin and podocin expression in vitro and in vivo. , 2005, Kidney international.

[85]  Erik I Christensen,et al.  Renal uptake of myoglobin is mediated by the endocytic receptors megalin and cubilin. , 2003, American journal of physiology. Renal physiology.

[86]  M. Hind,et al.  Retinoic acid, a regeneration‐inducing molecule , 2003, Developmental dynamics : an official publication of the American Association of Anatomists.

[87]  J. Bonventre,et al.  Kidney Injury Molecule-1 (KIM-1): a novel biomarker for human renal proximal tubule injury. , 2002, Kidney international.

[88]  J. Fyfe,et al.  Megalin and cubilin are endocytic receptors involved in renal clearance of hemoglobin. , 2002, Journal of the American Society of Nephrology : JASN.

[89]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[90]  Joseph V. Bonventre,et al.  Kidney Injury Molecule-1 (KIM-1), a Putative Epithelial Cell Adhesion Molecule Containing a Novel Immunoglobulin Domain, Is Up-regulated in Renal Cells after Injury* , 1998, The Journal of Biological Chemistry.

[91]  E. Plow,et al.  A MAC-1 attack: integrin functions directly challenged in knockout mice. , 1997, The Journal of clinical investigation.

[92]  B. Aggarwal,et al.  Inhibition by all‐trans‐retinoic acid of tumor necrosis factor and nitric oxide production by peritoneal macrophages , 1994, Journal of leukocyte biology.

[93]  M. Shago,et al.  Expression of a retinoic acid response element-hsplacZ transgene defines specific domains of transcriptional activity during mouse embryogenesis. , 1991, Genes & development.

[94]  David A. Hume,et al.  Mononuclear phagocyte system of the mouse defined by immunohistochemical localization of antigen F4/80. Identification of resident macrophages in renal medullary and cortical interstitium and the juxtaglomerular complex , 1983, The Journal of experimental medicine.

[95]  A. Sakula,et al.  VITAMIN A AND CANCER , 1980, The Lancet.

[96]  R. Blomhoff,et al.  Gene expression regulation by retinoic acid , 2020 .

[97]  M. D. de Caestecker,et al.  Translating Knowledge Into Therapy for Acute Kidney Injury. , 2018, Seminars in nephrology.

[98]  M. Okusa,et al.  Acute kidney injury in the cancer patient. , 2014, Advances in chronic kidney disease.

[99]  B. Aggarwal,et al.  Determination and regulation of nitric oxide production from macrophages by lipopolysaccharides, cytokines, and retinoids. , 1996, Methods in enzymology.