Building proteins in a day: Efficient 3D molecular reconstruction
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[1] Boris Polyak. Some methods of speeding up the convergence of iteration methods , 1964 .
[2] J. Besag. Statistical Analysis of Non-Lattice Data , 1975 .
[3] Y. Nesterov. A method for solving the convex programming problem with convergence rate O(1/k^2) , 1983 .
[4] L. Reimer,et al. Transmission electron microscopy , 2019, Bancroft's Theory and Practice of Histological Techniques.
[5] A. Horwich,et al. The crystal structure of the asymmetric GroEL–GroES–(ADP)7 chaperonin complex , 1997, Nature.
[6] Shun-ichi Amari,et al. Natural Gradient Works Efficiently in Learning , 1998, Neural Computation.
[7] F. Sigworth. A maximum-likelihood approach to single-particle image refinement. , 1998, Journal of structural biology.
[8] V. Lebedev,et al. A QUADRATURE FORMULA FOR THE SPHERE OF THE 131ST ALGEBRAIC ORDER OF ACCURACY , 1999 .
[9] Kenji Fukumizu,et al. Adaptive Method of Realizing Natural Gradient Learning for Multilayer Perceptrons , 2000, Neural Computation.
[10] Simon J. Godsill,et al. On sequential Monte Carlo sampling methods for Bayesian filtering , 2000, Stat. Comput..
[11] Kiriakos N. Kutulakos,et al. A Probabilistic Theory of Occupancy and Emptiness , 2002, ECCV.
[12] Jiang Hsieh,et al. Computed Tomography: Principles, Design, Artifacts, and Recent Advances, Fourth Edition , 2022 .
[13] N. Grigorieff,et al. Accurate determination of local defocus and specimen tilt in electron microscopy. , 2003, Journal of structural biology.
[14] R. Henderson,et al. Structure of the mitochondrial ATP synthase by electron cryomicroscopy , 2003, The EMBO journal.
[15] Kiriakos N. Kutulakos,et al. A Theory of Shape by Space Carving , 2000, International Journal of Computer Vision.
[16] Clinton S Potter,et al. ACE: automated CTF estimation. , 2005, Ultramicroscopy.
[17] J. Keeler. Understanding NMR Spectroscopy , 2005 .
[18] David J. Kriegman,et al. Structure and View Estimation for Tomographic Reconstruction: A Bayesian Approach , 2006, 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'06).
[19] G. Herman,et al. Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization , 2007, Nature Methods.
[20] Nikolaus Grigorieff,et al. FREALIGN: high-resolution refinement of single particle structures. , 2007, Journal of structural biology.
[21] Wen Jiang,et al. EMAN2: an extensible image processing suite for electron microscopy. , 2007, Journal of structural biology.
[22] Nicolas Le Roux,et al. Topmoumoute Online Natural Gradient Algorithm , 2007, NIPS.
[23] J. Frank,et al. Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules. , 2009, Journal of structural biology.
[24] D. Potts,et al. Sampling Sets and Quadrature Formulae on the Rotation Group , 2009 .
[25] B. Rupp. Biomolecular Crystallography: Principles, Practice, and Application to Structural Biology , 2009 .
[26] Richard Szeliski,et al. Building Rome in a day , 2009, 2009 IEEE 12th International Conference on Computer Vision.
[27] Navdeep Jaitly,et al. A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy , 2010, Bioinform..
[28] James Martens,et al. Deep learning via Hessian-free optimization , 2010, ICML.
[29] Robert E. Kass,et al. Importance sampling: a review , 2010 .
[30] Andrew W. Fitzgibbon,et al. A fast natural Newton method , 2010, ICML.
[31] Sjors H.W. Scheres,et al. RELION: Implementation of a Bayesian approach to cryo-EM structure determination , 2012, Journal of structural biology.
[32] Wolfgang Heidrich,et al. Stochastic tomography and its applications in 3D imaging of mixing fluids , 2012, ACM Trans. Graph..
[33] Mark W. Schmidt,et al. A Stochastic Gradient Method with an Exponential Convergence Rate for Strongly-Convex Optimization with Finite Training Sets , 2012, ArXiv.
[34] W. Lau,et al. Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase , 2011, Nature.
[35] M. Baker,et al. Outcome of the First Electron Microscopy Validation Task Force Meeting , 2012, Structure.
[36] Jianhua Zhao,et al. TMaCS: a hybrid template matching and classification system for partially-automated particle selection. , 2013, Journal of structural biology.
[37] D. Agard,et al. Electron counting and beam-induced motion correction enable near atomic resolution single particle cryoEM , 2013, Nature Methods.
[38] Geoffrey E. Hinton,et al. On the importance of initialization and momentum in deep learning , 2013, ICML.
[39] J M Carazo,et al. Xmipp 3.0: an improved software suite for image processing in electron microscopy. , 2013, Journal of structural biology.
[40] J. Frank,et al. Automated particle picking for low-contrast macromolecules in cryo-electron microscopy. , 2014, Journal of structural biology.