Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae
暂无分享,去创建一个
[1] M. Johnston,et al. Glucose as a hormone: receptor-mediated glucose sensing in the yeast Saccharomyces cerevisiae. , 2005, Biochemical Society transactions.
[2] Filip Rolland,et al. Glucose-sensing and -signalling mechanisms in yeast. , 2002, FEMS yeast research.
[3] Yukiko Matsuoka,et al. Using process diagrams for the graphical representation of biological networks , 2005, Nature Biotechnology.
[4] M. Johnston,et al. How the Rgt1 Transcription Factor of Saccharomyces cerevisiae Is Regulated by Glucose , 2005, Genetics.
[5] P. Brown,et al. Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. , 1998, Genetics.
[6] C. Mann,et al. The Protein Kinase Snf1 Is Required for Tolerance to the Ribonucleotide Reductase Inhibitor Hydroxyurea , 2004, Molecular and Cellular Biology.
[7] H. Ronne,et al. Importance of a flanking AT-rich region in target site recognition by the GC box-binding zinc finger protein MIG1 , 1994, Molecular and cellular biology.
[8] Hans-Joachim Schüller,et al. Transcriptional activators Cat8 and Sip4 discriminate between sequence variants of the carbon source-responsive promoter element in the yeast Saccharomyces cerevisiae , 2004, Current Genetics.
[9] K. Sachs,et al. Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data , 2005, Science.
[10] K V Venkatesh,et al. Steady-state analysis of glucose repression reveals hierarchical expression of proteins under Mig1p control in Saccharomyces cerevisiae. , 2005, The Biochemical journal.
[11] H. Kitano,et al. A comprehensive map of the toll-like receptor signaling network , 2006, Molecular systems biology.
[12] Steffen Klamt,et al. Structural and functional analysis of cellular networks with CellNetAnalyzer , 2007, BMC Systems Biology.
[13] Edward R. Dougherty,et al. Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks , 2002, Bioinform..
[14] Steffen Klamt,et al. A methodology for the structural and functional analysis of signaling and regulatory networks , 2006, BMC Bioinformatics.
[15] G. Santangelo,et al. Glucose Signaling in Saccharomyces cerevisiae , 2006, Microbiology and Molecular Biology Reviews.
[16] Mark Johnston,et al. Regulatory Network Connecting Two Glucose Signal Transduction Pathways in Saccharomyces cerevisiae , 2004, Eukaryotic Cell.
[17] B. Palsson,et al. Transcriptional regulation in constraints-based metabolic models of Escherichia coli Covert , 2002 .
[18] P. J. Bhat,et al. Overproduction of the GAL1 or GAL3 protein causes galactose-independent activation of the GAL4 protein: evidence for a new model of induction for the yeast GAL/MEL regulon , 1992, Molecular and cellular biology.
[19] Mark Johnston,et al. Grr1 of Saccharomyces cerevisiae is connected to the ubiquitin proteolysis machinery through Skp1: coupling glucose sensing to gene expression and the cell cycle , 1997, The EMBO journal.
[20] Mark Johnston,et al. Glucose sensing and signaling in Saccharomyces cerevisiae through the Rgt2 glucose sensor and casein kinase I. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[21] Mark Johnston,et al. Integration of Transcriptional and Posttranslational Regulation in a Glucose Signal Transduction Pathway in Saccharomyces cerevisiae , 2006, Eukaryotic Cell.
[22] M. Carlson,et al. Sip4, a Snf1 kinase‐dependent transcriptional activator, binds to the carbon source‐responsive element of gluconeogenic genes , 1998, The EMBO journal.
[23] Xin Wang,et al. Intracellular Maltose Is Sufficient To Induce MAL Gene Expression in Saccharomyces cerevisiae , 2002, Eukaryotic Cell.
[24] Hiroshi Matsuno,et al. Structural Modeling and Analysis of Signaling Pathways Based on Petri Nets , 2006, J. Bioinform. Comput. Biol..
[25] P. Ljungdahl,et al. Sensors of extracellular nutrients in Saccharomyces cerevisiae , 2001, Current Genetics.
[26] Hans-Joachim Schüller,et al. Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiae , 2003, Current Genetics.
[27] H. Holzer,et al. Catabolite inactivation of the galactose uptake system in yeast. , 1977, The Journal of biological chemistry.
[28] C. Michels,et al. Genetic variation of the repeated MAL loci in natural populations of Saccharomyces cerevisiae and Saccharomyces paradoxus. , 1994, Genetics.
[29] Jens Nielsen,et al. Physiological characterization of glucose repression in the strains with SNF1 and SNF4 genes deleted. , 2008, Journal of biotechnology.
[30] M. J. Charron,et al. Molecular evolution of the telomere-associated MAL loci of Saccharomyces. , 1989, Genetics.
[31] M. J. Charron,et al. Structural and functional analysis of the MAL1 locus of Saccharomyces cerevisiae , 1986, Molecular and cellular biology.
[32] M. Carlson,et al. Glucose repression in yeast. , 1999, Current opinion in microbiology.
[33] Simon C Watkins,et al. Std1 and Mth1 Proteins Interact with the Glucose Sensors To Control Glucose-Regulated Gene Expression in Saccharomyces cerevisiae , 1999, Molecular and Cellular Biology.
[34] M. Johnston,et al. Feasting, fasting and fermenting. Glucose sensing in yeast and other cells. , 1999, Trends in genetics : TIG.
[35] M. Johnston,et al. Two zinc-finger-containing repressors are responsible for glucose repression of SUC2 expression , 1996, Molecular and cellular biology.
[36] M. Johnston,et al. Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae , 1994, Molecular and cellular biology.
[37] N. Blom,et al. Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. , 1999, Journal of molecular biology.
[38] M. Johnston,et al. Two Glucose-sensing Pathways Converge on Rgt1 to Regulate Expression of Glucose Transporter Genes in Saccharomyces cerevisiae* , 2006, Journal of Biological Chemistry.
[39] Fred Winston,et al. NRG1 is required for glucose repression of the SUC2 and GAL genes of Saccharomyces cerevisiae , 2001, BMC Genetics.
[40] J. Nielsen,et al. Integration of gene expression data into genome-scale metabolic models. , 2004, Metabolic engineering.
[41] Monika Heiner,et al. Application of Petri net based analysis techniques to signal transduction pathways , 2006, BMC Bioinformatics.
[42] James R Broach,et al. How Saccharomyces responds to nutrients. , 2008, Annual review of genetics.
[43] M. Johnston,et al. Two different repressors collaborate to restrict expression of the yeast glucose transporter genes HXT2 and HXT4 to low levels of glucose , 1996, Molecular and cellular biology.
[44] Claudine Chaouiya,et al. Petri net modelling of biological networks , 2007, Briefings Bioinform..
[45] D. Lohr,et al. Transcriptional regulation in the yeast GAL gene family: a complex genetic network , 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[46] P. Herrero,et al. The hexokinase 2-dependent glucose signal transduction pathway of Saccharomyces cerevisiae. , 2002, FEMS microbiology reviews.
[47] Lisbeth Olsson,et al. A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae , 2007, Biotechnology and bioengineering.
[48] P. Ja,et al. Inference in Bayesian Networks , 1999, AI Mag..
[49] J. Nielsen,et al. Physiological studies in aerobic batch cultivations of Saccharomyces cerevisiae strains harboring the MEL1 gene , 2000, Biotechnology and bioengineering.
[50] Curt Wittenberg,et al. Grr1-dependent inactivation of Mth1 mediates glucose-induced dissociation of Rgt1 from HXT gene promoters. , 2003, Molecular biology of the cell.
[51] F. Winston,et al. NRG 1 is required for glucose repression of the SUC 2 and GAL genes of Saccharomyces cerevisiae , 2001 .
[52] Nikolaj Blom,et al. NetPhosYeast: prediction of protein phosphorylation sites in yeast , 2007, Bioinform..
[53] M. Carlson,et al. Gal83 mediates the interaction of the Snf1 kinase complex with the transcription activator Sip4 , 1999, The EMBO journal.
[54] M. Johnston,et al. Rgt1p of Saccharomyces cerevisiae, a key regulator of glucose-induced genes, is both an activator and a repressor of transcription , 1996, Molecular and cellular biology.
[55] Mark Johnston,et al. Function and Regulation of Yeast Hexose Transporters , 1999, Microbiology and Molecular Biology Reviews.
[56] B. Zhang,et al. Analysis of the mechanism by which glucose inhibits maltose induction of MAL gene expression in Saccharomyces. , 2000, Genetics.
[57] H. Kitano,et al. A comprehensive pathway map of epidermal growth factor receptor signaling , 2005, Molecular systems biology.
[58] J. Hopper,et al. Gene activation by interaction of an inhibitor with a cytoplasmic signaling protein , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[59] Hans Ronne,et al. MIG1-dependent and MIG1-independent glucose regulation of MAL gene expression in Saccharomyces cerevisiae , 1995, Current Genetics.
[60] J. Nielsen,et al. Investigation of the impact of MIG1 and MIG2 on the physiology of Saccharomyces cerevisiae. , 1999, Journal of biotechnology.
[61] Jason A. Papin,et al. Topological analysis of mass-balanced signaling networks: a framework to obtain network properties including crosstalk. , 2004, Journal of theoretical biology.
[62] J. Nielsen,et al. Glucose control in Saccharomyces cerevisiae: the role of Mig1 in metabolic functions. , 1998, Microbiology.
[63] H. Ronne,et al. Control of yeast GAL genes by MIG1 repressor: a transcriptional cascade in the glucose response. , 1991, The EMBO journal.
[64] M. Carlson,et al. Glucose-regulated interaction of a regulatory subunit of protein phosphatase 1 with the Snf1 protein kinase in Saccharomyces cerevisiae. , 1998, Proceedings of the National Academy of Sciences of the United States of America.