Three-dimensional protein fold determination from backbone amide pseudocontact shifts generated by lanthanide tags at multiple sites.
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Thomas Huber | Gottfried Otting | Kala Bharath Pilla | Hiromasa Yagi | G. Otting | T. Huber | K. B. Pilla | Ansis Maleckis | Bim Graham | B. Graham | A. Maleckis | H. Yagi
[1] M. Ingelman-Sundberg,et al. Thioredoxin fold as homodimerization module in the putative chaperone ERp29: NMR structures of the domains and experimental model of the 51 kDa dimer. , 2001, Structure.
[2] G. Kontaxis. An improved algorithm for MFR fragment assembly , 2012, Journal of Biomolecular NMR.
[3] K. Wüthrich. NMR of proteins and nucleic acids , 1988 .
[4] David Baker,et al. Protein structure determination from pseudocontact shifts using ROSETTA. , 2012, Journal of molecular biology.
[5] J Meiler,et al. Model-free approach to the dynamic interpretation of residual dipolar couplings in globular proteins. , 2001, Journal of the American Chemical Society.
[6] Daohai Zhang,et al. Endoplasmic reticulum protein 29 (ERp29): An emerging role in cancer. , 2011, The international journal of biochemistry & cell biology.
[7] I. Bertini,et al. Efficiency of paramagnetism-based constraints to determine the spatial arrangement of α-helical secondary structure elements , 2002, Journal of biomolecular NMR.
[8] G. Otting,et al. [Ln(DPA)(3)](3-) is a convenient paramagnetic shift reagent for protein NMR studies. , 2009, Journal of the American Chemical Society.
[9] Thomas Huber,et al. Lanthanide tags for site-specific ligation to an unnatural amino acid and generation of pseudocontact shifts in proteins. , 2013, Bioconjugate chemistry.
[10] Jens Meiler,et al. Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects. , 2011, Progress in nuclear magnetic resonance spectroscopy.
[11] L. Suaud,et al. ERp29 restricts Connexin43 oligomerization in the endoplasmic reticulum. , 2009, Molecular biology of the cell.
[12] J. R. Tolman,et al. NMR Residual Dipolar Couplings as Probes of Biomolecular Dynamics , 2006 .
[13] Ivano Bertini,et al. Magnetic susceptibility in paramagnetic NMR , 2002 .
[14] Harald Schwalbe,et al. Protein alignment by a coexpressed lanthanide-binding tag for the measurement of residual dipolar couplings. , 2003, Journal of the American Chemical Society.
[15] A. Bax,et al. Dipolar couplings in macromolecular structure determination. , 2001, Methods in enzymology.
[16] Susan E. Brown,et al. Interaction of the Escherichia coli replication terminator protein (Tus) with DNA: a model derived from DNA-binding studies of mutant proteins by surface plasmon resonance. , 2000, Biochemistry.
[17] D. Richardson,et al. Endoplasmic reticulum protein 29 regulates epithelial cell integrity during the mesenchymal–epithelial transition in breast cancer cells , 2013, Oncogene.
[18] Ping Wu,et al. Identification of ERp29 as a biomarker for predicting nasopharyngeal carcinoma response to radiotherapy , 2011, Oncology reports.
[19] Ivano Bertini,et al. Solution NMR of Paramagnetic Molecules: Applications to metallobiomolecules and models , 2001 .
[20] I. Bertini,et al. Lanthanide-Induced Pseudocontact Shifts for Solution Structure Refinements of Macromolecules in Shells up to 40 Å from the Metal Ion , 2000 .
[21] Karen N. Allen,et al. Engineering encodable lanthanide-binding tags into loop regions of proteins. , 2011, Journal of the American Chemical Society.
[22] G. Otting. Protein NMR using paramagnetic ions. , 2010, Annual review of biophysics.
[23] C. Griesinger,et al. Paramagnetic tagging of diamagnetic proteins for solution NMR , 2006, Magnetic resonance in chemistry : MRC.
[24] J. Hus,et al. Determination of protein backbone structure using only residual dipolar couplings. , 2001, Journal of the American Chemical Society.
[25] Oliver F. Lange,et al. Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution , 2008, Science.
[26] Thomas Huber,et al. Gadolinium tagging for high-precision measurements of 6 nm distances in protein assemblies by EPR. , 2011, Journal of the American Chemical Society.
[27] I. Bertini,et al. NMR of paramagnetic molecules in biological systems , 1986 .
[28] Oliver F. Lange,et al. Consistent blind protein structure generation from NMR chemical shift data , 2008, Proceedings of the National Academy of Sciences.
[29] G. Otting,et al. A systematic study of labelling an α-helix in a protein with a lanthanide using IDA-SH or NTA-SH tags , 2013, Journal of biomolecular NMR.
[30] Gottfried Otting,et al. Prospects for lanthanides in structural biology by NMR , 2008, Journal of biomolecular NMR.
[31] J. Swarbrick,et al. An iminodiacetic acid based lanthanide binding tag for paramagnetic exchange NMR spectroscopy. , 2011, Angewandte Chemie.
[32] A. Robay,et al. ERp29 Regulates ΔF508 and Wild-type Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Trafficking to the Plasma Membrane in Cystic Fibrosis (CF) and Non-CF Epithelial Cells* , 2011, The Journal of Biological Chemistry.
[33] S. Mkrtchian,et al. The C-Terminal Domain of ERp29 Mediates Polyomavirus Binding, Unfolding, and Infection , 2008, Journal of Virology.
[34] G. Otting,et al. Strategies for measurements of pseudocontact shifts in protein NMR spectroscopy. , 2007, Chemphyschem : a European journal of chemical physics and physical chemistry.
[35] G. Otting,et al. Paramagnetic labelling of proteins and oligonucleotides for NMR , 2010, Journal of biomolecular NMR.
[36] J H Prestegard,et al. A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones. , 2001, Journal of the American Chemical Society.
[37] A. Papavassiliou,et al. ERp29 regulates response to doxorubicin by a PERK-mediated mechanism. , 2011, Biochimica et biophysica acta.
[38] Guido Pintacuda,et al. NMR structure determination of protein-ligand complexes by lanthanide labeling. , 2007, Accounts of chemical research.
[39] G. Bouvignies,et al. Simultaneous definition of high resolution protein structure and backbone conformational dynamics using NMR residual dipolar couplings. , 2007, Chemphyschem : a European journal of chemical physics and physical chemistry.
[40] Guido Pintacuda,et al. Weak alignment of paramagnetic proteins warrants correction for residual CSA effects in measurements of pseudocontact shifts. , 2005, Journal of the American Chemical Society.
[41] J. Boisbouvier,et al. Rapid measurement of residual dipolar couplings for fast fold elucidation of proteins , 2011, Journal of biomolecular NMR.
[42] G. Otting,et al. Numbat: an interactive software tool for fitting Δχ-tensors to molecular coordinates using pseudocontact shifts , 2008, Journal of biomolecular NMR.
[43] L. Banci,et al. NMR structures of paramagnetic metalloproteins , 2005, Quarterly Reviews of Biophysics (print).
[44] Ivano Bertini,et al. Perspectives in paramagnetic NMR of metalloproteins. , 2008, Dalton Transactions.
[45] P. Keizers,et al. Paramagnetic tagging for protein structure and dynamics analysis. , 2011, Progress in nuclear magnetic resonance spectroscopy.
[46] Oliver F. Lange,et al. NMR Structure Determination for Larger Proteins Using Backbone-Only Data , 2010, Science.
[47] P. Bradley,et al. High-resolution structure prediction and the crystallographic phase problem , 2007, Nature.
[48] Yun-Xing Wang,et al. Periodicity, planarity, and pixel (3P): a program using the intrinsic residual dipolar coupling periodicity-to-peptide plane correlation and phi/psi angles to derive protein backbone structures. , 2007, Journal of magnetic resonance.
[49] Thomas Huber,et al. DOTA-amide lanthanide tag for reliable generation of pseudocontact shifts in protein NMR spectra. , 2011, Bioconjugate chemistry.
[50] P. Neumann,et al. Crystal structure and functional analysis of the protein disulfide isomerase-related protein ERp29. , 2009, Journal of molecular biology.
[51] Ke Ruan,et al. De novo determination of internuclear vector orientations from residual dipolar couplings measured in three independent alignment media , 2008, Journal of biomolecular NMR.