CancerSplicingQTL: a database for genome-wide identification of splicing QTLs in human cancer
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Nan Yang | Ying Zhu | Jiang Chang | Jing Gong | Hao Wan | Zhihua Wang | Xiaoyang Wang | Leng Han | Xiaoping Miao | Yang Yang | Shufang Mei | Jianbo Tian | Juntao Ke | Yajie Gong | Danyi Zou | Xiating Peng | Rong Zhong | Jiang Chang | X. Miao | Yang Yang | Ying Zhu | Y. Gong | Jing Gong | R. Zhong | Jianbo Tian | J. Ke | Leng Han | S. Mei | Nan Yang | Xiaoyang Wang | D. Zou | Xiating Peng | Zhihua Wang | X. Peng | Hao Wan | Yang Yang | Juntao Ke | Danyi Zou | Shufang Mei
[1] Robert Brown,et al. TCGASpliceSeq a compendium of alternative mRNA splicing in cancer , 2015, Nucleic Acids Res..
[2] J. Long,et al. A Comprehensive cis-eQTL Analysis Revealed Target Genes in Breast Cancer Susceptibility Loci Identified in Genome-wide Association Studies. , 2018, American journal of human genetics.
[3] Michael D. Wilson,et al. The Evolutionary Landscape of Alternative Splicing in Vertebrate Species , 2012, Science.
[4] Yang Yang,et al. A Rare Variant P507L in TPP1 Interrupts TPP1–TIN2 Interaction, Influences Telomere Length, and Confers Colorectal Cancer Risk in Chinese Population , 2018, Cancer Epidemiology, Biomarkers & Prevention.
[5] Jun S. Liu,et al. The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans , 2015, Science.
[6] Emmanouil T. Dermitzakis,et al. Putative cis-regulatory drivers in colorectal cancer , 2014, Nature.
[7] Helen E. Parkinson,et al. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog) , 2016, Nucleic Acids Res..
[8] Tom R. Gaunt,et al. Systematic identification of genetic influences on methylation across the human life course , 2016, Genome Biology.
[9] Jiang Chang,et al. Integrative expression quantitative trait locus-based analysis of colorectal cancer identified a functional polymorphism regulating SLC22A5 expression. , 2018, European journal of cancer.
[10] Eric T. Wang,et al. Alternative Isoform Regulation in Human Tissue Transcriptomes , 2008, Nature.
[11] Roby Joehanes,et al. Identification of common genetic variants controlling transcript isoform variation in human whole blood , 2015, Nature Genetics.
[12] Andrew D. Johnson,et al. SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap , 2008, Bioinform..
[13] W. Symmans,et al. Alternative splicing disrupts a nuclear localization signal in spleen tyrosine kinase that is required for invasion suppression in breast cancer. , 2003, Cancer research.
[14] Zhao Zhang,et al. PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types , 2017, Nucleic Acids Res..
[15] E. Lander,et al. Lessons from the Cancer Genome , 2013, Cell.
[16] Patrick F. Sullivan,et al. High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction , 2015, Genome Biology.
[17] M. Peters,et al. Systematic identification of trans eQTLs as putative drivers of known disease associations , 2013, Nature Genetics.
[18] Benno Pütz,et al. Genome-wide mapping of genetic determinants influencing DNA methylation and gene expression in human hippocampus , 2017, Nature Communications.
[19] Sooyoung Cho,et al. ASpedia: a comprehensive encyclopedia of human alternative splicing , 2017, Nucleic Acids Res..
[20] T. Cooper,et al. Pre-mRNA splicing and human disease. , 2003, Genes & development.
[21] X. Miao,et al. A polymorphic MYC response element in KBTBD11 influences colorectal cancer risk, especially in interaction with an MYC-regulated SNP rs6983267 , 2017, Annals of oncology : official journal of the European Society for Medical Oncology.
[22] Atsushi Takata,et al. Genome-wide identification of splicing QTLs in the human brain and their enrichment among schizophrenia-associated loci , 2017, Nature Communications.
[23] Ellen T. Gelfand,et al. The Genotype-Tissue Expression (GTEx) project , 2013, Nature Genetics.
[24] Andrey A. Shabalin,et al. Matrix eQTL: ultra fast eQTL analysis via large matrix operations , 2011, Bioinform..
[25] B. Shastry. SNPs: impact on gene function and phenotype. , 2009, Methods in molecular biology.
[26] E. Volpe,et al. The Splicing Factor PTBP1 Promotes Expression of Oncogenic Splice Variants and Predicts Poor Prognosis in Patients with Non–muscle-Invasive Bladder Cancer , 2018, Clinical Cancer Research.
[27] D. Reich,et al. Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.
[28] R. Lothe,et al. Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes , 2016, Oncogene.
[29] Yang Yang,et al. A Rare Missense Variant in TCF7L2 Associates with Colorectal Cancer Risk by Interacting with a GWAS-Identified Regulatory Variant in the MYC Enhancer. , 2018, Cancer research.
[30] Mingyao Li,et al. Mapping Splicing Quantitative Trait Loci in RNA-Seq , 2014, Cancer informatics.
[31] R. Durbin,et al. Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses , 2012, Nature Protocols.
[32] E. Dermitzakis,et al. Alternative Splicing QTLs in European and African Populations , 2015, American journal of human genetics.
[33] Emilie Lalonde,et al. RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression. , 2011, Genome research.
[34] A. Chen-Plotkin,et al. The Post-GWAS Era: From Association to Function. , 2018, American journal of human genetics.
[35] O. Abdel-Wahab,et al. Aberrant RNA Splicing in Cancer. , 2019, Annual review of cancer biology.
[36] J. Fackenthal,et al. Aberrant RNA splicing and its functional consequences in cancer cells , 2008, Disease Models & Mechanisms.