Fabrication and characterization of a porous silicon based microarray for label-free optical monitoring of biomolecular interactions

We have fabricated a microarray of porous silicon Bragg reflectors on a crystalline silicon substrate using a technological process based on standard photolithography and electrochemical anodization of the silicon. The array density is of 170 elements/cm2 and each element has a diameter of 200 μm. The porous silicon structures have been used as platform to immobilize an amino terminated DNA single strand probe. All fabrication steps have been monitored by spectroscopic reflectometry, optical and electron microscopy, and Fourier transform infrared spectroscopy. A label-free detection method has been employed to investigate the hybridization between micromolar DNA probe and its complementary target. Due to fast and low cost production, good reproducibility, and high quality optical features, this platform could be adopted also for other different microarray applications such as proteomics and medical diagnostics.

[1]  Y. Lyubchenko,et al.  Scanning tunneling microscopy of mercapto-hexyl-oligonucleotides attached to gold. , 1996, Biophysical journal.

[2]  Thomas Laurell,et al.  Porous silicon surfaces – A candidate substrate for reverse protein arrays in cancer biomarker detection , 2007, Electrophoresis.

[3]  Krisztian Kordas,et al.  Thermal oxidation of porous silicon: Study on structure , 2005 .

[4]  K. Barla,et al.  Porosity and Pore Size Distributions of Porous Silicon Layers , 1987 .

[5]  Masayoshi Esashi,et al.  Local formation of macroporous silicon through a mask , 2004 .

[6]  M. Cooper,et al.  Direct acoustic profiling of DNA hybridisation using HSV type 1 viral sequences. , 2008, The Analyst.

[7]  C. Prestidge,et al.  Aqueous and thermal oxidation of porous silicon microparticles: implications on molecular interactions. , 2008, Langmuir : the ACS journal of surfaces and colloids.

[8]  James G. Grote,et al.  Refractive‐index anisotropy and optical dispersion in films of deoxyribonucleic acid , 2007 .

[9]  J. Youngblood,et al.  Optimization of silica silanization by 3-aminopropyltriethoxysilane. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[10]  L. Canham Bioactive silicon structure fabrication through nanoetching techniques , 1995 .

[11]  Dieter Stoll,et al.  Protein microarrays for antibody profiling: Specificity and affinity determination on a chip , 2005, Proteomics.

[12]  Mehmet Toner,et al.  Multifunctional Encoded Particles for High-Throughput Biomolecule Analysis , 2007, Science.

[13]  William C Reinhold,et al.  Diagnostic markers that distinguish colon and ovarian adenocarcinomas: identification by genomic, proteomic, and tissue array profiling. , 2003, Cancer research.

[14]  Joonyeong Kim,et al.  Formation, structure, and reactivity of amino-terminated organic films on silicon substrates. , 2009, Journal of colloid and interface science.

[15]  Eckhard Quandt,et al.  Discrimination of single mutations in cancer-related gene fragments with a surface acoustic wave sensor. , 2006, Analytical chemistry.

[16]  Luca De Stefano,et al.  DNA Optical Detection Based on Porous Silicon Technology: from Biosensors to Biochips , 2007, Sensors (Basel, Switzerland).

[17]  S. Xiao,et al.  Gel-pad microarrays templated by patterned porous silicon for dual-mode detection of proteins. , 2009, Lab on a chip.

[18]  Suhana Mohd Said,et al.  DNA hybridization detection by porous silicon-based DNA microarray in conjugation with infrared microspectroscopy , 2007 .

[19]  S. Schreiber,et al.  Printing proteins as microarrays for high-throughput function determination. , 2000, Science.

[20]  Philippe M. Fauchet,et al.  Quantitative analysis of the sensitivity of porous silicon optical biosensors , 2006 .

[21]  Ivo Rendina,et al.  Porous silicon-based optical biosensors and biochips , 2007 .