Discovering monotonic stemness marker genes from time-series stem cell microarray data
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Chin-Teng Lin | Nikhil R. Pal | Wei-Chung Cheng | George C. Tseng | Ting-Yu Chang | Hsei-Wei Wang | I-Fang Chung | Hsing-Jen Sun | Hung-Hao Lo | Shing-Jyh Chang | G. Tseng | Wei-Chung Cheng | Shing-Jyh Chang | N. Pal | Hsei-Wei Wang | Chin-Teng Lin | Ting-Yu Chang | I-Fang Chung | H. Lo | Hsing-Jen Sun
[1] Niku Oksala,et al. ADAM-9, ADAM-15, and ADAM-17 are upregulated in macrophages in advanced human atherosclerotic plaques in aorta and carotid and femoral arteries—Tampere vascular study , 2009, Annals of medicine.
[2] R Bicknell,et al. Activin-A binds to a heterotrimeric receptor complex on the vascular endothelial cell surface. Evidence for a type 3 activin receptor. , 1994, The Journal of biological chemistry.
[3] U. Förstermann,et al. Paraoxonase-2 Reduces Oxidative Stress in Vascular Cells and Decreases Endoplasmic Reticulum Stress–Induced Caspase Activation , 2007, Circulation.
[4] D. Charnock-Jones,et al. Regulation of vascular growth and function in the human placenta. , 2009, Reproduction.
[5] Jean YH Yang,et al. Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.
[6] J. Nichols,et al. Functional Expression Cloning of Nanog, a Pluripotency Sustaining Factor in Embryonic Stem Cells , 2003, Cell.
[7] H Glatt,et al. Characterization of two novel protocadherins (PCDH8 and PCDH9) localized on human chromosome 13 and mouse chromosome 14. , 1998, Genomics.
[8] Stephen J Lye,et al. Insulin-like growth factor-I receptor-mediated vasculogenesis/angiogenesis in human lung development. , 2003, American journal of respiratory cell and molecular biology.
[9] J. Gustafsson,et al. TACC3 expression is tightly regulated during early differentiation. , 2003, Gene expression patterns : GEP.
[10] K. Schenke-Layland,et al. Mapping the first stages of mesoderm commitment during differentiation of human embryonic stem cells , 2010, Proceedings of the National Academy of Sciences.
[11] G. A. Whitmore,et al. Nonparametric Methods for Microarray Data Based on Exchangeability and Borrowed Power , 2005, Journal of biopharmaceutical statistics.
[12] Ziv Shkedy,et al. Testing for Trends in Dose-Response Microarray Experiments: A Comparison of Several Testing Procedures, Multiplicity and Resampling-Based Inference , 2007, Statistical applications in genetics and molecular biology.
[13] I. Chung,et al. Identification of Single- and Multiple-Class Specific Signature Genes from Gene Expression Profiles by Group Marker Index , 2011, PloS one.
[14] J. Klijanienko,et al. Chromatin Assembly Factor-1, a Marker of Clinical Value to Distinguish Quiescent from Proliferating Cells , 2004, Cancer Research.
[15] Martyn Plummer,et al. The R Journal , 2012 .
[16] Herbert Schulz,et al. Neural Differentiation of Embryonic Stem Cells In Vitro: A Road Map to Neurogenesis in the Embryo , 2009, PloS one.
[17] Byung-Chun Kim,et al. Average Bioequivalence for Two-Sequence Two-Period Crossover Design with Incomplete Data , 2005, Journal of biopharmaceutical statistics.
[18] Erin McMillan,et al. Regionally Specified Human Neural Progenitor Cells Derived from the Mesencephalon and Forebrain Undergo Increased Neurogenesis Following Overexpression of ASCL1 , 2009, Stem cells.
[19] S. Gultekin,et al. A serologic marker of paraneoplastic limbic and brain-stem encephalitis in patients with testicular cancer. , 1999, The New England journal of medicine.
[20] Kazunari Taira,et al. Mortalin-MPD (mevalonate pyrophosphate decarboxylase) interactions and their role in control of cellular proliferation. , 2003, Biochemical and biophysical research communications.
[21] Kiminobu Sugaya,et al. Reelin induces a radial glial phenotype in human neural progenitor cells by activation of Notch-1 , 2008, BMC Developmental Biology.
[22] P. Campochiaro,et al. ADAM9 Is Involved in Pathological Retinal Neovascularization , 2009, Molecular and Cellular Biology.
[23] Gord Fishell,et al. Brain Lipid-binding Protein Is a Direct Target of Notch Signaling in Radial Glial Cells , 2005 .
[24] Nikica Zaninovic,et al. Expansion and maintenance of human embryonic stem cell–derived endothelial cells by TGFβ inhibition is Id1 dependent , 2010, Nature Biotechnology.
[25] Patricia G. Wilson,et al. Development and differentiation of neural rosettes derived from human embryonic stem cells , 2006, Stem Cell Reviews.
[26] A. Iwama,et al. Characterization of TEK receptor tyrosine kinase and its ligands, Angiopoietins, in human hematopoietic progenitor cells. , 1998, International immunology.
[27] D Poswillo,et al. The pathogenesis of the Treacher Collins syndrome (mandibulofacial dysostosis). , 1976, The British journal of oral surgery.
[28] Chin-Teng Lin,et al. Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems , 2008, BMC Bioinformatics.
[29] Peter Carmeliet,et al. VEGF and PlGF promote adult vasculogenesis by enhancing EPC recruitment and vessel formation at the site of tumor neovascularization , 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[30] M. Richards,et al. The Transcriptome Profile of Human Embryonic Stem Cells as Defined by SAGE , 2004, Stem cells.
[31] Karl-Heinz Krause,et al. A Sox1 to Pax6 Switch Drives Neuroectoderm to Radial Glia Progression During Differentiation of Mouse Embryonic Stem Cells , 2009, Stem cells.
[32] Jukka Partanen,et al. Functional Network Reconstruction Reveals Somatic Stemness Genetic Maps and Dedifferentiation‐Like Transcriptome Reprogramming Induced by GATA2 , 2008, Stem cells.
[33] William C Reinhold,et al. Apoptotic susceptibility of cancer cells selected for camptothecin resistance: gene expression profiling, functional analysis, and molecular interaction mapping. , 2003, Cancer research.
[34] P. Andrews,et al. The Role of SMAD4 in Human Embryonic Stem Cell Self‐Renewal and Stem Cell Fate , 2010, Stem cells.
[35] Markus Münz,et al. The carcinoma-associated antigen EpCAM upregulates c-myc and induces cell proliferation , 2004, Oncogene.
[36] Jui-Yu Hsieh,et al. Liver X receptor α (LXRα/NR1H3) regulates differentiation of hepatocyte-like cells via reciprocal regulation of HNF4α. , 2014, Journal of hepatology.
[37] Hao Li,et al. Identification of gene expression patterns using planned linear contrasts , 2006, BMC Bioinformatics.
[38] J. Beavo,et al. Cloning and characterization of PDE7B, a cAMP-specific phosphodiesterase. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[39] Zheng Kuang,et al. Heart-specific isoform of tropomyosin4 is essential for heartbeat in zebrafish embryos. , 2008, Cardiovascular research.
[40] Kee Woei Ng,et al. MDM4 downregulates p53 transcriptional activity and response to stress during differentiation , 2011, Cell cycle.
[41] J. Cuzick. A Wilcoxon-type test for trend. , 1985, Statistics in medicine.
[42] J. Johnston,et al. Signaling by type I and II cytokine receptors: ten years after. , 2001, Current opinion in immunology.
[43] G. Chinnadurai,et al. CtBP, an unconventional transcriptional corepressor in development and oncogenesis. , 2002, Molecular cell.
[44] A. D'ercole,et al. Somatomedins/insulin-like growth factors and fetal growth. , 1987, Journal of developmental physiology.
[45] Gang Wang,et al. Chromobox Protein Homolog 3 Is Essential for Stem Cell Differentiation to Smooth Muscles In Vitro and in Embryonic Arteriogenesis , 2011, Arteriosclerosis, thrombosis, and vascular biology.
[46] U. Kutay,et al. Deciphering the cellular pathway for transport of poly(A)-binding protein II. , 2000, RNA.
[47] Sean J Morrison,et al. Temporal specification of blood progenitors from mouse embryonic stem cells and induced pluripotent stem cells , 2010, Development.
[48] H. Schöler,et al. Formation of Pluripotent Stem Cells in the Mammalian Embryo Depends on the POU Transcription Factor Oct4 , 1998, Cell.
[49] J. Cuzick,et al. A Wilcoxon-type test for trend. , 1985, Statistics in medicine.
[50] Jerrold M. Ward,et al. Hepatocyte Nuclear Factor 4α (Nuclear Receptor 2A1) Is Essential for Maintenance of Hepatic Gene Expression and Lipid Homeostasis , 2001, Molecular and Cellular Biology.
[51] J. Rossant,et al. tek, a novel tyrosine kinase gene located on mouse chromosome 4, is expressed in endothelial cells and their presumptive precursors. , 1992, Oncogene.
[52] A. Visel,et al. Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors , 2008, Cell.
[53] Nicola Baldini,et al. Identification of RB1CC1, a novel human gene that can induce RB1 in various human cells , 2002, Oncogene.
[54] Margaret Gardiner-Garden,et al. Overexpression of the Cell Adhesion Molecules DDR1, Claudin 3, and Ep-CAM in Metaplastic Ovarian Epithelium and Ovarian Cancer , 2004, Clinical Cancer Research.
[55] William Lehman,et al. Tropomyosin variants describe distinct functional subcellular domains in differentiated vascular smooth muscle cells. , 2011, American journal of physiology. Cell physiology.
[56] H. Schnürch,et al. Expression of tie-2, a member of a novel family of receptor tyrosine kinases, in the endothelial cell lineage. , 1993, Development.
[57] Valerie Reinke,et al. Rescue of embryonic lethality in Mdm4-null mice by loss of Trp53 suggests a nonoverlapping pathway with MDM2 to regulate p53 , 2001, Nature Genetics.
[58] E. Li,et al. Cloning, expression and chromosome locations of the human DNMT3 gene family. , 1999, Gene.
[59] Michael Aviram,et al. Urokinase activates macrophage PON2 gene transcription via the PI3K/ROS/MEK/SREBP-2 signalling cascade mediated by the PDGFR-beta. , 2009, Cardiovascular research.
[60] C. Lim,et al. Neuregulin-1β regulation of embryonic endothelial progenitor cell survival. , 2011, American journal of physiology. Heart and circulatory physiology.
[61] E. Benz,et al. Novel Splicing Factor RBM25 Modulates Bcl-x Pre-mRNA 5′ Splice Site Selection , 2008, Molecular and Cellular Biology.
[62] Ziv Shkedy,et al. IsoGene: An R Package for Analyzing Dose-response Studies in Microarray Experiments , 2010, R J..
[63] X Wu,et al. FOXC2 transcription factor: a novel regulator of lymphangiogenesis. , 2011, Lymphology.
[64] Shi-hong Zhao,et al. Annexin A2 promotes choroidal neovascularization by increasing vascular endothelial growth factor expression in a rat model of argon laser coagulation-induced choroidal neovascularization. , 2010, Chinese medical journal.
[65] Daekyu Sun,et al. Heterogeneous nuclear ribonucleoprotein K and nucleolin as transcriptional activators of the vascular endothelial growth factor promoter through interaction with secondary DNA structures. , 2011, Biochemistry.
[66] Shigetaka Kitajima,et al. Developmental Pluripotency-associated 4 (DPPA4) Localized in Active Chromatin Inhibits Mouse Embryonic Stem Cell Differentiation into a Primitive Ectoderm Lineage* , 2007, Journal of Biological Chemistry.
[67] F. Eckenstein,et al. Acidic and basic fibroblast growth factors in the nervous system: distribution and differential alteration of levels after injury of central versus peripheral nerve , 1991, The Journal of neuroscience : the official journal of the Society for Neuroscience.
[68] J. Mesirov,et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. , 1999, Science.
[69] M You,et al. Gene expression signatures identify novel regulatory pathways during murine lung development: implications for lung tumorigenesis , 2003, Journal of medical genetics.
[70] A. Jochemsen,et al. MDMX: a novel p53‐binding protein with some functional properties of MDM2. , 1996, The EMBO journal.
[71] S. Nourshargh,et al. PECAM-1: a multi-functional molecule in inflammation and vascular biology. , 2007, Arteriosclerosis, thrombosis, and vascular biology.
[72] Stuart Egginton,et al. A Novel Role for PECAM-1 (CD31) in Regulating Haematopoietic Progenitor Cell Compartmentalization between the Peripheral Blood and Bone Marrow , 2008, PloS one.
[73] Sung-Bae Cho,et al. Ensemble classifiers based on correlation analysis for DNA microarray classification , 2006, Neurocomputing.
[74] F. Eckenstein,et al. Fibroblast growth factors in the nervous system. , 1994, Journal of neurobiology.
[75] G. Prendergast,et al. RhoB controls Akt trafficking and stage-specific survival of endothelial cells during vascular development. , 2003, Genes & development.
[76] Kay Hofmann,et al. Identification of KIAA1018/FAN1, a DNA Repair Nuclease Recruited to DNA Damage by Monoubiquitinated FANCD2 , 2010, Cell.
[77] Sofia D. Merajver,et al. RhoC-GTPase is a Novel Tissue Biomarker Associated with Biologically Aggressive Carcinomas of the Breast , 2005, Breast Cancer Research and Treatment.
[78] Alan Trounson,et al. The production and directed differentiation of human embryonic stem cells. , 2006, Endocrine reviews.
[79] D W Cox,et al. Disruption of the neuronal PAS3 gene in a family affected with schizophrenia , 2003, Journal of medical genetics.
[80] H. Robenek,et al. Tropomyosin 4 expression is enhanced in dedifferentiating smooth muscle cells in vitro and during atherogenesis. , 2003, European journal of cell biology.
[81] Ryoichiro Kageyama,et al. Hes genes regulate size, shape and histogenesis of the nervous system by control of the timing of neural stem cell differentiation , 2004, Development.
[82] W. Kruskal,et al. Use of Ranks in One-Criterion Variance Analysis , 1952 .
[83] AbigailWoodfin,et al. PECAM-1: A Multi-Functional Molecule in Inflammation and Vascular Biology , 2007 .
[84] J. Privratsky,et al. Relative contribution of PECAM-1 adhesion and signaling to the maintenance of vascular integrity , 2011, Journal of Cell Science.
[85] Felix P. Exkenstien. Fibrolast growth factors in the nervous system , 1994 .