Tripartite Regulation of Gln3p by TOR, Ure2p, and Phosphatases*

Gln3p is a GATA-type transcription factor responsive to different nitrogen nutrients and starvation in yeastSaccharomyces cerevisiae. Recent evidence has linked TOR signaling to Gln3p. Rapamycin causes dephosphorylation and nuclear translocation of Gln3p, thereby activating nitrogen catabolite repressible-sensitive genes. However, a detailed mechanistic understanding of this process is lacking. In this study, we show that Tor1p physically interacts with Gln3p. An intact TOR kinase domain is essential for the phosphorylation of Gln3p, inhibition of Gln3p nuclear entry and repression of Gln3p-dependent transcription. In contrast, at least two distinct protein phosphatases, Pph3p and the Tap42p-dependent phosphatases, are involved in the activation of Gln3p. The yeast pro-prion protein Ure2p binds to both hyper- and hypo-phosphorylated Gln3p. In contrast to the free Gln3p, the Ure2p-bound Gln3p is signifcantly resistant to dephosphorylation. Taken together, these results reveal a tripartite regulatory mechanism by which the phosphorylation of Gln3p is regulated.

[1]  R. Wickner,et al.  A protein required for prion generation: [URE3] induction requires the Ras-regulated Mks1 protein. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[2]  B. André,et al.  The pleiotropic UGA35(DURL) regulatory gene of Saccharomyces cerevisiae: cloning, sequence and identity with the DAL81 gene. , 1991, Gene.

[3]  Peer Bork,et al.  HEAT repeats in the Huntington's disease protein , 1995, Nature Genetics.

[4]  J. Heitman,et al.  Rapamycin Induces the G0 Program of Transcriptional Repression in Yeast by Interfering with the TOR Signaling Pathway , 1998, Molecular and Cellular Biology.

[5]  A. Shaw,et al.  The 14-3-3 proteins positively regulate rapamycin-sensitive signaling , 1998, Current Biology.

[6]  G. Thomas,et al.  Target of rapamycin (TOR): balancing the opposing forces of protein synthesis and degradation. , 1999, Current opinion in genetics & development.

[7]  J. Heitman,et al.  Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast , 1991, Science.

[8]  A. Schmidt,et al.  The TOR nutrient signalling pathway phosphorylates NPR1 and inhibits turnover of the tryptophan permease , 1998, The EMBO journal.

[9]  E. O’Shea,et al.  The receptor Msn5 exports the phosphorylated transcription factor Pho4 out of the nucleus , 1998, Nature.

[10]  Michael N. Hall,et al.  The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors , 1999, Nature.

[11]  K. Arndt,et al.  Nutrients, via the Tor proteins, stimulate the association of Tap42 with type 2A phosphatases. , 1996, Genes & development.

[12]  T. Powers,et al.  Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae. , 1999, Molecular biology of the cell.

[13]  B. Magasanik,et al.  Interaction of the GATA factor Gln3p with the nitrogen regulator Ure2p in Saccharomyces cerevisiae , 1996, Journal of bacteriology.

[14]  R. Wickner,et al.  Prion domain initiation of amyloid formation in vitro from native Ure2p. , 1999, Science.

[15]  A. Futcher,et al.  Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae , 1995, Yeast.

[16]  S. Schreiber,et al.  The PIK-related kinases intercept conventional signaling pathways. , 1999, Chemistry & biology.

[17]  Jan E. Schnitzer,et al.  Role of GTP Hydrolysis in Fission of Caveolae Directly from Plasma Membranes , 1996, Science.

[18]  J. Broach,et al.  Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast , 1999, The EMBO journal.

[19]  J. Heitman,et al.  The TOR signaling cascade regulates gene expression in response to nutrients. , 1999, Genes & development.

[20]  T. Cooper,et al.  Cross regulation of four GATA factors that control nitrogen catabolic gene expression in Saccharomyces cerevisiae , 1997, Journal of bacteriology.

[21]  E. Craig,et al.  Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. , 1996, Genetics.

[22]  T. A. Brown,et al.  A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. , 1990, Nucleic acids research.

[23]  S. Schreiber,et al.  Identification of an 11-kDa FKBP12-rapamycin-binding domain within the 289-kDa FKBP12-rapamycin-associated protein and characterization of a critical serine residue. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[24]  J. Boeke,et al.  Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR‐mediated gene disruption and other applications , 1998, Yeast.

[25]  P. B. Mahajan Modulation of transcription of rRNA genes by rapamycin. , 1994, International journal of immunopharmacology.

[26]  S. Schreiber,et al.  Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[27]  M. Mclaughlin,et al.  Yeast TOR (DRR) proteins: amino-acid sequence alignment and identification of structural motifs. , 1994, Gene.

[28]  Stuart L. Schreiber,et al.  TOR kinase domains are required for two distinct functions, only one of which is inhibited by rapamycin , 1995, Cell.

[29]  P. Silver,et al.  In or out? Regulating nuclear transport. , 1999, Current opinion in cell biology.

[30]  J. Kunz,et al.  TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast. , 1994, Molecular biology of the cell.

[31]  R. Wickner,et al.  Mks1p is a regulator of nitrogen catabolism upstream of Ure2p in Saccharomyces cerevisiae. , 1999, Genetics.

[32]  S. Snyder,et al.  Interaction of RAFT1 with gephyrin required for rapamycin-sensitive signaling. , 1999, Science.

[33]  G. Fink,et al.  Methods in yeast genetics , 1979 .

[34]  J. Heitman,et al.  Protein kinase activity and identification of a toxic effector domain of the target of rapamycin TOR proteins in yeast. , 1999, Molecular biology of the cell.