Pharmacological targeting of NLRP3 deubiquitination for treatment of NLRP3-associated inflammatory diseases

Thiolutin, an inhibitor of the BRISC deubiquitinating enzyme complex, specifically and potently inhibits NLRP3 inflammasome activation. DUBbing new inflammasome inhibitors Inflammasome assembly and activation leading to mature IL-1β release is dysregulated in a wide range of inflammatory diseases. Optimal activation of the NLRP3 inflammasome requires the activity of BRISC, a deubiquitinating enzyme (DUB) complex composed of four protein subunits including BRCC3. Ren et al. demonstrate that the compound thiolutin, a zinc chelator that inhibits JAMM domain–containing metalloproteases including BRCC3, can potently inhibit NLRP3 deubiquitination and inflammasome activation. Thiolutin was effective at inhibiting NLRP3 activation and preventing IL-1β production in multiple mouse models of inflammatory disease, including a model of diet-induced nonalcoholic fatty liver disease. Holomycin, a derivative of thiolutin with reduced toxicity, was also effective at inhibiting NLRP3, paving the way to develop novel agents that selectively target deubiquitination of NLRP3 to regulate its activity. Pharmacologically inhibiting nucleotide-binding domain and leucine-rich repeat-containing (NLR) family, pyrin domain–containing protein 3 (NLRP3) inflammasome activation results in potent therapeutic effects in a wide variety of preclinical inflammatory disease models. NLRP3 deubiquitination is essential for efficient NLRP3 inflammasome activity, but it remains unclear whether this process can be harnessed for therapeutic benefit. Here, we show that thiolutin (THL), an inhibitor of the JAB1/MPN/Mov34 (JAMM) domain–containing metalloprotease, blocks NLRP3 inflammasome activation by canonical, noncanonical, alternative, and transcription-independent pathways at nanomolar concentrations. In addition, THL potently inhibited the activation of multiple NLRP3 mutants linked with cryopyrin-associated periodic syndromes (CAPS). Treatment with THL alleviated NLRP3-related diseases in mouse models of lipopolysaccharide-induced sepsis, monosodium urate–induced peritonitis, experimental autoimmune encephalomyelitis, CAPS, and methionine-choline–deficient diet-induced nonalcoholic fatty liver disease. Mechanistic studies revealed that THL inhibits the BRCC3-containing isopeptidase complex (BRISC)–mediated NLRP3 deubiquitination and activation. In addition, we show that holomycin, a natural methyl derivative of THL, displays an even higher inhibitory activity against NLRP3 inflammasome than THL. Our study validates that posttranslational modification of NLRP3 can be pharmacologically targeted to prevent or treat NLRP3-associated inflammatory diseases. Future clinical development of derivatives of THL may provide new therapies for NLRP3-related diseases.

[1]  D. Brough,et al.  Inhibiting the NLRP3 Inflammasome , 2020, Molecules.

[2]  S. Cuzzocrea,et al.  Focus on the Role of NLRP3 Inflammasome in Diseases , 2020, International journal of molecular sciences.

[3]  L. Joosten,et al.  Dapansutrile, an oral selective NLRP3 inflammasome inhibitor, for treatment of gout flares: an open-label, dose-adaptive, proof-of-concept, phase 2a trial. , 2020, The Lancet Rheumatology.

[4]  K. Qin,et al.  The BRCC3 regulated by Cdk5 promotes the activation of neuronal NLRP3 inflammasome in Parkinson's disease models. , 2019, Biochemical and biophysical research communications.

[5]  B. Ebert,et al.  Functional characterization of BRCC3 mutations in acute myeloid leukemia with t(8;21)(q22;q22.1) , 2019, Leukemia.

[6]  M. Singh,et al.  Regulation of oxidized LDL-induced inflammatory process through NLRP3 inflammasome activation by the deubiquitinating enzyme BRCC36 , 2019, Inflammation Research.

[7]  J. Konvalinka,et al.  MCC950/CRID3 potently targets the NACHT domain of wild-type NLRP3 but not disease-associated mutants for inflammasome inhibition , 2019, PLoS biology.

[8]  T. Bouwmeester,et al.  Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation , 2019, Molecular cell.

[9]  C. Day,et al.  MCC950 directly targets the NLRP3 ATP-hydrolysis motif for inflammasome inhibition , 2019, Nature Chemical Biology.

[10]  J. Ting,et al.  The NLRP3 inflammasome: molecular activation and regulation to therapeutics , 2019, Nature Reviews Immunology.

[11]  Yang Xiao,et al.  ABRO1 promotes NLRP3 inflammasome activation through regulation of NLRP3 deubiquitination , 2019, The EMBO journal.

[12]  Hao Wu,et al.  LncRNA ANRIL promotes NLRP3 inflammasome activation in uric acid nephropathy through miR-122-5p/BRCC3 axis. , 2019, Biochimie.

[13]  Yun Liu,et al.  POH1 deubiquitinates pro-interleukin-1β and restricts inflammasome activity , 2018, Nature Communications.

[14]  Qun Zhou,et al.  Knockdown of BRCC3 exerts an anti-tumor effect on cervical cancer in vitro , 2018, Molecular medicine reports.

[15]  E. Latz,et al.  Targeting the NLRP3 inflammasome in inflammatory diseases , 2018, Nature Reviews Drug Discovery.

[16]  Qingsong Liu,et al.  Oridonin is a covalent NLRP3 inhibitor with strong anti-inflammasome activity , 2018, Nature Communications.

[17]  Xianming Deng,et al.  Tranilast directly targets NLRP3 to treat inflammasome‐driven diseases , 2018, EMBO molecular medicine.

[18]  L. Joosten,et al.  OLT1177, a β-sulfonyl nitrile compound, safe in humans, inhibits the NLRP3 inflammasome and reverses the metabolic cost of inflammation , 2018, Proceedings of the National Academy of Sciences.

[19]  Qingsong Liu,et al.  Identification of a selective and direct NLRP3 inhibitor to treat inflammatory disorders , 2017, The Journal of experimental medicine.

[20]  Stephen P. Jackson,et al.  Deubiquitylating enzymes and drug discovery: emerging opportunities , 2017, Nature Reviews Drug Discovery.

[21]  Zhaoxin Lu,et al.  Identification and characterization of Streptomyces flavogriseus NJ-4 as a novel producer of actinomycin D and holomycin , 2017, PeerJ.

[22]  Seth M. Cohen,et al.  Capzimin is a potent and specific inhibitor of proteasome isopeptidase Rpn11. , 2017, Nature chemical biology.

[23]  R. Deshaies,et al.  Thiolutin is a zinc chelator that inhibits the Rpn11 and other JAMM metalloproteases. , 2017, Nature chemical biology.

[24]  K. Schroder,et al.  NLRP3 inflammasome blockade reduces liver inflammation and fibrosis in experimental NASH in mice. , 2017, Journal of hepatology.

[25]  A. Shiver,et al.  Role for dithiolopyrrolones in disrupting bacterial metal homeostasis , 2017, Proceedings of the National Academy of Sciences.

[26]  E. Altmann,et al.  Targeted inhibition of the COP9 signalosome for treatment of cancer , 2016, Nature Communications.

[27]  Jonathan L. Schmid-Burgk,et al.  Human Monocytes Engage an Alternative Inflammasome Pathway. , 2016, Immunity.

[28]  A. Heck,et al.  Higher -Order Assembly of BRCC36–KIAA0157 Is Required for DUB Activity and Biological Function , 2015, Molecular cell.

[29]  Hui Chang,et al.  BRCC3 acts as a prognostic marker in nasopharyngeal carcinoma patients treated with radiotherapy and mediates radiation resistance in vitro , 2015, Radiation oncology.

[30]  K. Schroder,et al.  A small-molecule inhibitor of the NLRP3 inflammasome for the treatment of inflammatory diseases , 2015, Nature Medicine.

[31]  P. Woo,et al.  Phenotypic and genotypic characteristics of cryopyrin-associated periodic syndrome: a series of 136 patients from the Eurofever Registry , 2014, Annals of the rheumatic diseases.

[32]  E. Strieter,et al.  Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product , 2014, Biochemistry.

[33]  L. Gram,et al.  Toxicity of Bioactive and Probiotic Marine Bacteria and Their Secondary Metabolites in Artemia sp. and Caenorhabditis elegans as Eukaryotic Model Organisms , 2013, Applied and Environmental Microbiology.

[34]  R. Greenberg,et al.  A BRISC-SHMT complex deubiquitinates IFNAR1 and regulates interferon responses. , 2013, Cell reports.

[35]  M. T. Wong,et al.  Noncanonical Inflammasome Activation by Intracellular LPS Independent of TLR4 , 2013, Science.

[36]  Junying Yuan,et al.  Deubiquitination of NLRP3 by BRCC3 critically regulates inflammasome activity. , 2013, Molecular cell.

[37]  G. López-Castejón,et al.  Deubiquitinases Regulate the Activity of Caspase-1 and Interleukin-1β Secretion via Assembly of the Inflammasome , 2012, The Journal of Biological Chemistry.

[38]  R. Greenberg,et al.  Differential Regulation of JAMM Domain Deubiquitinating Enzyme Activity within the RAP80 Complex* , 2010, The Journal of Biological Chemistry.

[39]  Monika Schneider,et al.  NLRP3 Plays a Critical Role in the Development of Experimental Autoimmune Encephalomyelitis by Mediating Th1 and Th17 Responses , 2010, The Journal of Immunology.

[40]  D. Wink,et al.  Thiolutin inhibits endothelial cell adhesion by perturbing Hsp27 interactions with components of the actin and intermediate filament cytoskeleton , 2010, Cell Stress and Chaperones.

[41]  D. Kastner,et al.  Inflammasome-mediated disease animal models reveal roles for innate but not adaptive immunity. , 2009, Immunity.

[42]  Seth L Masters,et al.  Horror autoinflammaticus: the molecular pathophysiology of autoinflammatory disease (*). , 2009, Annual review of immunology.

[43]  Lawrence Steinman,et al.  How to successfully apply animal studies in experimental allergic encephalomyelitis to research on multiple sclerosis , 2006, Annals of neurology.

[44]  F. Martinon,et al.  Gout-associated uric acid crystals activate the NALP3 inflammasome , 2006, Nature.

[45]  V. Dixit,et al.  Cryopyrin activates the inflammasome in response to toxins and ATP , 2006, Nature.

[46]  M. Kawada,et al.  Thiolutin, an inhibitor of HUVEC adhesion to vitronectin, reduces paxillin in HUVECs and suppresses tumor cell‐induced angiogenesis , 2001, International journal of cancer.

[47]  I. Chopra,et al.  Antimicrobial Properties and Mode of Action of the Pyrrothine Holomycin , 2001, Antimicrobial Agents and Chemotherapy.

[48]  J. Rockenbach,et al.  [Bactericidal, protozoicidal and fungicidal properties of thiolutin]. , 1952, Antibiotics & chemotherapy.

[49]  R. Zhou,et al.  The strategies of targeting the NLRP3 inflammasome to treat inflammatory diseases. , 2020, Advances in immunology.