Triosephosphate isomerase: 15N and 13C chemical shift assignments and conformational change upon ligand binding by magic-angle spinning solid-state NMR spectroscopy.
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[1] D. Wishart,et al. Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts , 2003, Journal of Biomolecular NMR.
[2] J. Lindon,et al. Resolution enhancement in FT NMR through the use of a double exponential function , 1978 .
[3] M Karplus,et al. Computer simulation and analysis of the reaction pathway of triosephosphate isomerase. , 1991, Biochemistry.
[4] Jau Tang,et al. An alternative to fourier transform spectral analysis with improved resolution , 1985 .
[5] M. Noble,et al. Comparison of the refined crystal structures of liganded and unliganded chicken, yeast and trypanosomal triosephosphate isomerase. , 1992, Journal of molecular biology.
[6] J. Knowles,et al. Active site of triosephosphate isomerase: in vitro mutagenesis and characterization of an altered enzyme. , 1985, Proceedings of the National Academy of Sciences of the United States of America.
[7] H. Oschkinat,et al. Sample optimization and identification of signal patterns of amino acid side chains in 2D RFDR spectra of the alpha-spectrin SH3 domain. , 2000, Journal of magnetic resonance.
[8] G. Petsko,et al. Probing the catalytic mechanism of yeast triose phosphate isomerase by site-specific mutagenesis. , 1984, Biochemical Society transactions.
[9] B. Meier,et al. Broadband dipolar recoupling in rotating solids: a numerical comparison of some pulse schemes. , 1998, Solid state nuclear magnetic resonance.
[10] Kiyonori Takegoshi,et al. 13C–1H dipolar-assisted rotational resonance in magic-angle spinning NMR , 2001 .
[11] G Vriend,et al. Refined 1.83 A structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M-ammonium sulphate. A comparison with the structure of the trypanosomal triosephosphate isomerase-glycerol-3-phosphate complex. , 1991, Journal of molecular biology.
[12] M. Noble,et al. The adaptability of the active site of trypanosomal triosephosphate isomerase as observed in the crystal structures of three different complexes , 1991, Proteins.
[13] T. Harris,et al. NMR studies of the role of hydrogen bonding in the mechanism of triosephosphate isomerase. , 1997, Biochemistry.
[14] Nicolas Giraud,et al. Solid state NMR sequential resonance assignments and conformational analysis of the 2×10.4 kDa dimeric form of the Bacillus subtilis protein Crh , 2003, Journal of biomolecular NMR.
[15] S. Grzesiek,et al. NMRPipe: A multidimensional spectral processing system based on UNIX pipes , 1995, Journal of biomolecular NMR.
[16] A. McDermott,et al. Solid-state NMR study and assignments of the KcsA potassium ion channel of S. lividans. , 2007, Biochimica et biophysica acta.
[17] Rachel W. Martin,et al. Assignments of carbon NMR resonances for microcrystalline ubiquitin. , 2004, Journal of the American Chemical Society.
[18] S. Parthasarathy,et al. Structure of the Plasmodium falciparum triosephosphate isomerase-phosphoglycolate complex in two crystal forms: characterization of catalytic loop open and closed conformations in the ligand-bound state. , 2002, Biochemistry.
[19] P. Kollman,et al. DO ENZYMES STABILIZE TRANSITION STATES BY ELECTROSTATIC INTERACTIONS OR PKA BALANCE : THE CASE OF TRIOSE PHOSPHATE ISOMERASE (TIM) ? , 1995 .
[20] C L Verlinde,et al. Structure of the complex between trypanosomal triosephosphate isomerase and N‐hydroxy‐4‐phosphono‐butanamide: Binding at the active site despite an “open” flexible loop conformation , 1992, Protein science : a publication of the Protein Society.
[21] R. A. Mckay,et al. Double-cross-polarization NMR of solids , 1979 .
[22] R. Friesner,et al. Computational modeling of the catalytic reaction in triosephosphate isomerase. , 2004, Journal of molecular biology.
[23] J. P. Loria,et al. Dynamic requirements for a functional protein hinge. , 2007, Journal of molecular biology.
[24] T. Pakkanen,et al. Ab initio models for receptor‐ligand interactions in proteins. 4. Model assembly study of the catalytic mechanism of triosephosphate isomerase , 1996, Proteins.
[25] D W Banner,et al. On the three-dimensional structure and catalytic mechanism of triose phosphate isomerase. , 1981, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[26] J. Knowles,et al. Triosephosphate isomerase requires a positively charged active site: the role of lysine-12. , 1994, Biochemistry.
[27] B. Meier,et al. Methods for sequential resonance assignment in solid, uniformly 13C, 15N labelled peptides: Quantification and application to antamanide , 2001, Journal of biomolecular NMR.
[28] Peter A. Kollman,et al. The intramolecular mechanism for the second proton transfer in triosephosphate isomerase (TIM): A QM/FE approach , 2003, J. Comput. Chem..
[29] Gerald A. Pearson,et al. A general baseline-recognition and baseline-flattening algorithm , 1977 .
[30] G. C. Levy,et al. Improvement of linear prediction processing of NMR spectra having very low signal-to-noise , 1987 .
[31] L. Tong,et al. Optimal alignment for enzymatic proton transfer: Structure of the Michaelis complex of triosephosphate isomerase at 1.2-Å resolution , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[32] J. Knowles,et al. pH-dependence of the triose phosphate isomerase reaction. , 1972, The Biochemical journal.
[33] G. Petsko,et al. Electrophilic catalysis in triosephosphate isomerase: the role of histidine-95. , 1991, Biochemistry.
[34] A. McDermott,et al. The time scale of the catalytic loop motion in triosephosphate isomerase. , 2001, Journal of molecular biology.
[35] J. Knowles,et al. How can a catalytic lesion be offset? The energetics of two pseudorevertant triosephosphate isomerases. , 1990, Biochemistry.
[36] G. Petsko,et al. Triosephosphate isomerase: removal of a putatively electrophilic histidine residue results in a subtle change in catalytic mechanism. , 1988, Biochemistry.
[37] L. Tong,et al. Solution-state NMR investigations of triosephosphate isomerase active site loop motion: ligand release in relation to active site loop dynamics. , 2001, Journal of molecular biology.
[38] F. C. Hartman,et al. Structure of yeast triosephosphate isomerase at 1.9-A resolution. , 1990, Biochemistry.
[39] A. Wand,et al. Assignment of the backbone resonances for microcrystalline ubiquitin. , 2004, Journal of the American Chemical Society.
[40] Eric Oldfield,et al. 1H, 13C and 15N chemical shift referencing in biomolecular NMR , 1995, Journal of biomolecular NMR.
[41] Jau Tang,et al. Two-dimensional LPZ spectral analysis with improved resolution and sensitivity , 1986 .
[42] A. McDermott,et al. Substrate product equilibrium on a reversible enzyme, triosephosphate isomerase , 2007, Proceedings of the National Academy of Sciences.
[43] J. Knowles,et al. Stabilization of a reaction intermediate as a catalytic device: definition of the functional role of the flexible loop in triosephosphate isomerase. , 1990, Biochemistry.
[44] J. Knowles,et al. Direct observation of substrate distortion by triosephosphate isomerase using Fourier transform infrared spectroscopy. , 1980, Biochemistry.
[45] J. Knowles,et al. Triosephosphate isomerase: energetics of the reaction catalyzed by the yeast enzyme expressed in Escherichia coli. , 1988, Biochemistry.
[46] J. Baynes,et al. Chemical modification of proteins by methylglyoxal. , 1998, Cellular and molecular biology.
[47] D. Torchia,et al. An NMR study of the backbone dynamics of staphylococcal nuclease in the crystalline state , 1991 .
[48] D. Filippov,et al. Secondary chemical shifts in immobilized peptides and proteins: A qualitative basis for structure refinement under Magic Angle Spinning , 2001, Journal of biomolecular NMR.
[49] J. Knowles,et al. Neutral imidazole is the electrophile in the reaction catalyzed by triosephosphate isomerase: structural origins and catalytic implications. , 1991, Biochemistry.
[50] D. van Ormondt,et al. Retrieval of frequencies, amplitudes, damping factors, and phases from time-domain signals using a linear least-squares procedure , 1985 .
[51] Benjamin J. Wylie,et al. Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis. , 2005, Journal of the American Chemical Society.
[52] T. Harris. The mechanistic ventures of triosephosphate isomerase , 2008, IUBMB life.
[53] J. Zou,et al. Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.
[54] M. Blackledge,et al. Solution structure and dynamics of Crh, the Bacillus subtilis catabolite repression HPr. , 2002, Journal of molecular biology.
[55] K. Wüthrich,et al. Digital filtering with a sinusoidal window function: An alternative technique for resolution enhancement in FT NMR , 1976 .
[56] G A Petsko,et al. Crystallographic analysis of the complex between triosephosphate isomerase and 2-phosphoglycolate at 2.5-A resolution: implications for catalysis. , 1990, Biochemistry.
[57] I. A. Rose,et al. The mechanism of the triosephosphate isomerase reaction. , 1959, The Journal of biological chemistry.
[58] J. Knowles,et al. Free-energy profile of the reaction catalyzed by triosephosphate isomerase. , 1976, Biochemistry.
[59] E. R. Andrew,et al. Nuclear Magnetic Resonance Spectra from a Crystal rotated at High Speed , 1958, Nature.
[60] A. Wand,et al. Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein. , 1996, Biochemistry.
[61] Understanding protein lids: structural analysis of active hinge mutants in triosephosphate isomerase. , 2004, Protein engineering, design & selection : PEDS.
[62] Francesca Massi,et al. Solution NMR and computer simulation studies of active site loop motion in triosephosphate isomerase. , 2006, Biochemistry.
[63] J. Knowles,et al. Energetics of triosephosphate isomerase: the nature of the proton transfer between the catalytic base and solvent water. , 1976, Biochemistry.