The Ecosystem in Practice: Interest and Problems of an Old Definition for Constructing Ecological Models

Since its inception, the ecosystem concept has been widely used in ecology and is increasingly finding application within other disciplines. In more recent times within ecology, however, it has been suggested the term is now obsolete. We argue that three problems lie at the heart of these criticisms, namely the physics–biology duality problem, the boundary problem and the abstraction problem. The physics–biology duality problem (how to grapple with systems that follow the laws of both physics and biology) is addressed by modern computer science techniques originating from simulation and software engineering. The boundary problem (how to find the limits of an ecosystem in the real world) is solved by a powerful assumption of Tansley, that the ecosystem is an ad hoc construct on the part of an observer for a particular purpose. The abstraction problem (can models of an ecosystem at different levels of detail produce the same outcomes) has no general solution, but can be improved upon by using scaling techniques and standards to facilitate model comparisons. We demonstrate that Tansley’s (Ecology 16:284–307, 1935) definition is still relevant to modern ecology almost as is. Tansley’s ecosystem is a multi-disciplinary, recursive, scale-independent and observer-dependent object. These properties closely match those of complex systems as defined in mathematics and computer sciences. From Tansley’s definition, we propose a formal description of the concepts and relations linked to the ecosystem definition, as an ontology that can serve as a basis for future discussion, modelling and conceptual work.

[1]  Sven Erik Jørgensen,et al.  Ecosystems emerging: toward an ecology of complex systems in a complex future , 1992 .

[2]  Belinda Barnes,et al.  An ecological framework linking scales across space and time based on self-thinning. , 2004, Theoretical population biology.

[3]  Michel Loreau,et al.  Functional diversity governs ecosystem response to nutrient enrichment , 2000, Nature.

[4]  Jean-Daniel Zucker,et al.  A grounded theory of abstraction in artificial intelligence. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[5]  Brian D. Fath,et al.  Distributed control in ecological networks , 2004 .

[6]  Stephen J. Mellor,et al.  Executable UML - A Foundation for Model-Driven Architecture , 2002, Addison Wesley object technology series.

[7]  Jacques Ferber,et al.  Les Systèmes multi-agents: vers une intelligence collective , 1995 .

[8]  J. Lawton,et al.  Declining biodiversity can alter the performance of ecosystems , 1994, Nature.

[9]  Henrik Eriksson,et al.  The evolution of Protégé: an environment for knowledge-based systems development , 2003, Int. J. Hum. Comput. Stud..

[10]  M. Loreau Does functional redundancy exist , 2004 .

[11]  David W. Embley,et al.  Object-oriented systems analysis , 1992 .

[12]  Fausto Giunchiglia,et al.  A Theory of Abstraction , 1992, Artif. Intell..

[13]  Huayong Zhang,et al.  A statistical thermodynamic model of the organizational order of vegetation , 2002 .

[14]  Jonathan Ozik,et al.  Visual agent-based model development with repast simphony. , 2007 .

[15]  Marco Janssen,et al.  Individual-Based Modelling and Ecology by Volker Grimm and Steven F. Railsback , 2006, J. Artif. Soc. Soc. Simul..

[16]  P. Holgate,et al.  Matrix Population Models. , 1990 .

[17]  Robert V. O'Neill,et al.  IS IT TIME TO BURY THE ECOSYSTEM CONCEPT? (WITH FULL MILITARY HONORS, OF COURSE!)1 , 2001 .

[18]  Denis Phan,et al.  Agent-based Modelling and Simulation in the Social and Human Sciences , 2007 .

[19]  J. Lawton,et al.  Organisms as ecosystem engineers , 1994 .

[20]  Richard Law,et al.  Spatio‐temporal development of forests – current trends in field methods and models , 2004 .

[21]  M. Loreau Linking biodiversity and ecosystems: towards a unifying ecological theory , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.

[22]  Bernard P. Zeigler,et al.  Theory of Modeling and Simulation: Integrating Discrete Event and Continuous Complex Dynamic Systems , 2000 .

[23]  Charles M. Macal,et al.  Managing Business Complexity: Discovering Strategic Solutions with Agent-Based Modeling and Simulation , 2007 .

[24]  Bernard Cappelaere,et al.  Towards an understanding of coupled physical and biological processes in the cultivated Sahel - 1. Energy and water , 2009 .

[25]  Benjamin Smith,et al.  Representation of vegetation dynamics in the modelling of terrestrial ecosystems: comparing two contrasting approaches within European climate space , 2008 .

[26]  R. O'Neill A Hierarchical Concept of Ecosystems. , 1986 .

[27]  Monica G. Turner,et al.  At Last: A Journal Devoted to Ecosystem Science , 1998, Ecosystems.

[28]  Kurt Jax,et al.  Ecological Units: Definitions and Application , 2006, The Quarterly Review of Biology.

[29]  James J. Elser,et al.  A stoichiometric analysis of the zooplankton–phytoplankton interaction in marine and freshwater ecosystems , 1994, Nature.

[30]  E. Newman,et al.  Towards a unified ecology: T.F.H. Allen and T.W. Hoekstra, 1992. Columbia University Press, New York. Paperback, xiv + 384 pp. Price: $32.50. ISBN 0-231-06919-7 , 1994 .

[31]  Hassane Bil-Assanou Issoufou,et al.  Towards an understanding of coupled physical and biological processes in the cultivated Sahel - 2. Vegetation and carbon dynamics , 2009 .

[32]  Christopher A. Lepczyk,et al.  An ontology for landscapes , 2008 .

[33]  B. Breckling,et al.  The concepts of emergent and collective properties in individual-based models—Summary and outlook of the Bornhöved case studies , 2005 .

[34]  Pereira,et al.  Plant diversity and productivity experiments in european grasslands , 1999, Science.

[35]  Karin Frank,et al.  Pattern-oriented modelling in population ecology , 1996 .

[36]  K. Friederichs,et al.  Grundsätzliches über die Lebenseinheiten höherer Ordnung und den ökologischen Einheitsfaktor , 1927, Naturwissenschaften.

[37]  Jonathan J. Cole,et al.  Respiration rates in bacteria exceed phytoplankton production in unproductive aquatic systems , 1997, Nature.

[38]  Karl August Möbius,et al.  Die Auster und die Austernwirthschaft , 1877, Nature.

[39]  Steward T. A. Pickett,et al.  The self-identity of ecological units , 1998 .

[40]  F. A. Bazzaz,et al.  THE REGULATION OF LEAF, RAMET AND GENET DENSITIES IN EXPERIMENTAL POPULATIONS OF THE RHIZOMATOUS PERENNIAL SOLIDAGO CANADENSIS , 1985 .

[41]  T. Allen,et al.  Toward a Unified Ecology. , 1994 .

[42]  Asunción Gómez-Pérez,et al.  Ontological Engineering: With Examples from the Areas of Knowledge Management, e-Commerce and the Semantic Web , 2004, Advanced Information and Knowledge Processing.

[43]  J. P. Grime,et al.  Biodiversity and Ecosystem Functioning: Current Knowledge and Future Challenges , 2001, Science.

[44]  Charles M. Macal,et al.  Managing Business Complexity: Discovering Strategic Solutions with Agent-Based Modeling and Simulation , 2007 .

[45]  A. Tansley The Use and Abuse of Vegetational Concepts and Terms , 1935 .

[46]  Jean-Pierre Müller,et al.  Emergence of Collective Behaviour and Problem Solving , 2003, ESAW.

[47]  Norbert Giambiasi,et al.  Generalized discrete event abstraction of continuous systems: GDEVS formalism , 2006, Simul. Model. Pract. Theory.

[48]  Ferdinando Villa,et al.  Integrating modelling architecture: a declarative framework for multi-paradigm, multi-scale ecological modelling , 2001 .

[49]  Nelson Minar,et al.  The Swarm Simulation System: A Toolkit for Building Multi-Agent Simulations , 1996 .

[50]  Kilian Stoffel,et al.  Simulation modelling of ecological hierarchies in constructive dynamical systems , 2007 .

[51]  Michel Loreau,et al.  Biodiversity and ecosystem functioning: recent theoretical advances , 2000 .

[52]  László Orlóci,et al.  On hierarchical partitioning of an ecological complexity function , 2000 .

[53]  James H. Cowan,et al.  The ecosystem approach: Its use and abuse , 1993 .

[54]  T. C. Whitmore,et al.  A Comparison of Montane and Lowland Rain Forest in Ecuador I. The Forest Structure, Physiognomy, and Floristics , 1963 .

[55]  Alexis Drogoul,et al.  GAMA: An Environment for Implementing and Running Spatially Explicit Multi-agent Simulations , 2009, PRIMA.

[56]  Antonio De Nicola,et al.  A software engineering approach to ontology building , 2009, Inf. Syst..

[57]  John Phillips,et al.  THE USE AND ABUSE OF VEGETATIONAL CONCEPTS AND TERMS , 2008 .

[58]  Birgit Müller,et al.  A standard protocol for describing individual-based and agent-based models , 2006 .

[59]  Douglas H. Deutschman,et al.  Details That Matter: The Spatial Distribution of Individual Trees Maintains Forest Ecosystem Function , 1995 .

[60]  J. Dessalles,et al.  Emergence in multi-agent systems: conceptual and methodological issues , 2007 .

[61]  N. E. Gallopoulos,et al.  Strategies for Manufacturing , 1989 .

[62]  S. Pimm The complexity and stability of ecosystems , 1984, Nature.

[63]  D. Green,et al.  Interactions matter—complexity in landscapes and ecosystems , 2005 .

[64]  T. F. H. Allen,et al.  The confusion between scale‐defined levels and conventional levels of organization in ecology , 1990 .

[65]  Shayne Flint Aspect-Oriented Thinking - An approach to bridging the disciplinary divides , 2006 .

[66]  Duncan J. Watts,et al.  Collective dynamics of ‘small-world’ networks , 1998, Nature.

[67]  E. Odum Fundamentals of Ecology. , 1955 .

[68]  Raymond L. Lindeman The trophic-dynamic aspect of ecology , 1942 .

[69]  Nicola Guarino,et al.  Formal ontology, conceptual analysis and knowledge representation , 1995, Int. J. Hum. Comput. Stud..

[70]  W. Z. Lidicker,et al.  Levels of organization in biology: on the nature and nomenclature of ecology’s fourth level , 2007, Biological reviews of the Cambridge Philosophical Society.

[71]  U. Netlogo Wilensky,et al.  Center for Connected Learning and Computer-Based Modeling , 1999 .

[72]  T. Long,et al.  RÉFLEXIONS SUR LA PUISSANCE MOTRICE DU FEU, ET SUR LES MACHINES PROPRES A DÉVELOPPER CETTE PUISSANCE. , 1903 .

[73]  Thomas R. Gruber,et al.  A translation approach to portable ontology specifications , 1993, Knowl. Acquis..

[74]  M. L. Cadenasso,et al.  The Ecosystem as a Multidimensional Concept: Meaning, Model, and Metaphor , 2002, Ecosystems.

[75]  W. Michael Kemp,et al.  The ecosystem approach: Its use and abuse : Gene E. Likens. Excellence in Ecology, Vol. 3, Ecology Institute, Oldendorf/Luhe, Germany, 1992, 166 pp., US $33.50, DM 59.00, ISSN 0932 2205 , 1995 .

[76]  Carlo Ricotta,et al.  From theoretical ecology to statistical physics and back: self-similar landscape metrics as a synthesis of ecological diversity and geometrical complexity , 2000 .

[77]  Guillaume Simioni,et al.  TREE LAYER SPATIAL STRUCTURE CAN AFFECT SAVANNA PRODUCTION AND WATER BUDGET: RESULTS OF A 3‐D MODEL , 2003 .

[78]  Kurt Jax,et al.  Function and “functioning” in ecology: what does it mean? , 2005 .

[79]  J. Gareth Polhill,et al.  The ODD protocol: A review and first update , 2010, Ecological Modelling.

[80]  Steffen Staab,et al.  Using ontologies with UML class-based modeling: The TwoUse approach , 2010, Data Knowl. Eng..

[81]  Raymond L. Lindeman The trophic-dynamic aspect of ecology , 1942 .

[82]  E. Odum,et al.  The Emergence of Ecology as a New Integrative Discipline , 1977, Science.

[83]  Stéphane Legendre,et al.  Predator foraging behaviour drives food-web topological structure. , 2009, The Journal of animal ecology.

[84]  J. Menaut,et al.  Structure and Primary Productivty of Lamto Savannas, Ivory Coast , 1979 .

[85]  Kurt Jax,et al.  Can We Define Ecosystems? On the Confusion Between Definition and Description of Ecological Concepts , 2007, Acta biotheoretica.

[86]  Lael Parrott,et al.  Quantifying the complexity of simulated spatiotemporal population dynamics , 2005 .

[87]  Guillaume Simioni,et al.  Changing scale in ecological modelling: A bottom up approach with an individual based vegetation model , 2007 .

[88]  R. O'Neill,et al.  Ecological Society of America IS IT TIME TO BURY THE ECOSYSTEM CONCEPT ? ( WITH FULL MILITARY HONORS , OF COURSE ! ) , 2001 .