OPTICAL BIOSENSORS FOR LABEL-FREE DETECTION OF BIOMOLECULAR INTERACTIONS

Biosensors are important tools in fields of biophysics, biochemistry, and biomedical engineering because they provide a platform for the detection of various analytes. Currently, fluorescence-based detection methods have been routinely used for their high sensitivity and diverse selections of labeling agents. However, tagging extra molecules (such as dyes) on to one of the binding pair might change the intrinsic binding affinity of that reaction. To do away with this drawback, label-free biosensors based on optical techniques have drawn more and more attention recently because they are non invasive to the biomolecules under investigation. This article reviews some modern optical biosensors including surface plasmon resonance, oblique-incidence reflectivity difference, interferometry, resonant cavity, and resonant waveguide grating. Some of these techniques have already been commercialized for biological applications. While surface plasmon resonance is the most sensitive and commonly used method, oblique-incidence reflectivity difference provides comparable sensitivity with additional advantages in throughput as well as compatibility. It is believed that in the future, optical techniques will still lead the way in the development of label-free biosensors for biological applications.

[1]  Gang Jin,et al.  Detection of avian influenza virus subtype H5 using a biosensor based on imaging ellipsometry. , 2010, Biosensors & bioelectronics.

[2]  M. Eichelberger,et al.  Interrogation of phosphor-specific interaction on a high-throughput label-free optical biosensor system–Epic® system , 2009, Journal of receptor and signal transduction research.

[3]  Y. Fei,et al.  High Throughput, Label-free Screening Small Molecule Compound Libraries for Protein-Ligands using Combination of Small Molecule Microarrays and a Special Ellipsometry-based Optical Scanner. , 2011, International drug discovery.

[4]  S. L. Bud'ko,et al.  Anomalous temperature-dependent transport in YbNi2B2C and its correlation to microstructural features , 2004 .

[5]  L. J. Cox Ellipsometry and Polarized Light , 1978 .

[6]  Andreas Brecht,et al.  Chemical and biochemical sensors based on interferometry at thin (multi-) layers , 1993 .

[7]  G. Gauglitz,et al.  Direct monitoring of antigen-antibody interactions by spectral interferometry , 1992 .

[8]  C. DeLisi,et al.  Resonant Cavity Imaging: A Means Toward High-Throughput Label-Free Protein Detection , 2008, IEEE Journal of Selected Topics in Quantum Electronics.

[9]  T. Pearson,et al.  Anti-peptide antibody screening: selection of high affinity monoclonal reagents by a refined surface plasmon resonance technique. , 2009, Journal of immunological methods.

[10]  David G Myszka,et al.  Characterizing high-affinity antigen/antibody complexes by kinetic- and equilibrium-based methods. , 2004, Analytical biochemistry.

[11]  Yang Liu,et al.  A global benchmark study using affinity-based biosensors. , 2009, Analytical biochemistry.

[12]  Matthew A Cooper,et al.  Optical biosensors: where next and how soon? , 2006, Drug discovery today.

[13]  Ye Fang,et al.  Resonant waveguide grating biosensor for living cell sensing. , 2006, Biophysical journal.

[14]  A. Mahmoud,et al.  Generic simple enzyme immunoassay approach to avert small molecule immobilization problems on solid phases Application to the determination of tobramycin in serum. , 2007, Talanta.

[15]  J P Landry,et al.  Incidence-angle dependence of optical reflectivity difference from an ultrathin film on solid surface. , 2006, Optics letters.

[16]  Moses Rodriguez,et al.  Surface plasmon resonance for high‐throughput ligand screening of membrane‐bound proteins , 2009, Biotechnology journal.

[17]  G. Gibson,et al.  Microarray Analysis , 2020, Definitions.

[18]  Moses Rodriguez,et al.  High-affinity binding of remyelinating natural autoantibodies to myelin-mimicking lipid bilayers revealed by nanohole surface plasmon resonance. , 2012, Analytical chemistry.

[19]  C. Y. Fong,et al.  An oblique-incidence optical reflectivity difference and LEED study of rare-gas growth on a lattice-mismatched metal substrate , 2004 .

[20]  Xiangdong Zhu Oblique-incidence optical reflectivity difference from a rough film of crystalline material , 2004 .

[21]  Mengsu Yang,et al.  Surface plasmon resonance study of the molecular recognition between polymerase and DNA containing various mismatches and conformational changes of DNA-protein complexes. , 2004, Biosensors & bioelectronics.

[22]  A. Limaye,et al.  Surface plasmon resonance detection using antibody-linked magnetic nanoparticles for analyte capture, purification, concentration, and signal amplification. , 2009, Analytical chemistry.

[23]  R. Azzam,et al.  Kinetics of protein adsorption and immunological reactions at a liquid/solid interface by ellipsometry. , 1977, Physics in medicine and biology.

[24]  S. Chen,et al.  The development of biosensor with imaging ellipsometry , 2004, The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[25]  K Dodgson,et al.  A 100K well screen for a muscarinic receptor using the Epic® label-free system – a reflection on the benefits of the label-free approach to screening seven-transmembrane receptors , 2009, Journal of receptor and signal transduction research.

[26]  E. Kashuba,et al.  Imaging technique for the screening of protein-protein interactions using scattered light under surface plasmon resonance conditions. , 2007, Analytical chemistry.

[27]  Xiangdong Zhu,et al.  Simultaneous measurement of 10,000 protein-ligand affinity constants using microarray-based kinetic constant assays. , 2012, Assay and drug development technologies.

[28]  Peter H Seeberger,et al.  Optimization of localized surface plasmon resonance transducers for studying carbohydrate-protein interactions. , 2012, Analytical chemistry.

[29]  F. Ligler,et al.  A continuous flow immunoassay for rapid and sensitive detection of small molecules. , 1990, Journal of immunological methods.

[30]  Danfeng Yao,et al.  Label-free detection of biomolecular interactions using BioLayer interferometry for kinetic characterization. , 2009, Combinatorial chemistry & high throughput screening.

[31]  G Gauglitz,et al.  Affinity detection of low molecular weight analytes. , 1996, Analytical chemistry.

[32]  Gang Jin,et al.  Feasibility of protein A for the oriented immobilization of immunoglobulin on silicon surface for a biosensor with imaging ellipsometry. , 2003, Journal of biochemical and biophysical methods.

[33]  Heiko Zettl,et al.  Comparative thermodynamic analysis of DNA--protein interactions using surface plasmon resonance and fluorescence correlation spectroscopy. , 2003, Biochemistry.

[34]  Matthias Schreiter,et al.  Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators , 2011, Analytical and bioanalytical chemistry.

[35]  H C Hemker,et al.  Ellipsometry as a tool to study protein films at liquid-solid interfaces. , 1978, Analytical biochemistry.

[36]  I Lundström,et al.  A biosensor concept based on imaging ellipsometry for visualization of biomolecular interactions. , 1995, Analytical biochemistry.

[37]  Xiangdong Zhu,et al.  Kinetic roughening during rare-gas homoepitaxy , 2000 .

[38]  Detection of lectin-glycan interaction using high resolution surface plasmon resonance. , 2008, The Analyst.

[39]  P. Stockley,et al.  Surface plasmon resonance assays of DNA-protein interactions. , 2009, Methods in molecular biology.

[40]  I. Pockrand,et al.  Surface plasma oscillations at silver surfaces with thin transparent and absorbing coatings , 1978 .

[41]  Takeshi Mori,et al.  Evaluation of protein kinase activities of cell lysates using peptide microarrays based on surface plasmon resonance imaging. , 2008, Analytical biochemistry.

[42]  Gang Jin,et al.  Phage M13KO7 detection with biosensor based on imaging ellipsometry and AFM microscopic confirmation , 2008, Virus Research.

[43]  W. Sawyer,et al.  Characterisation of lipid‐protein interactions using a surface plasmon resonance biosensor , 1996, Biochemistry and molecular biology international.

[44]  W. Knoll,et al.  Investigating the kinetics of DNA-DNA and PNA-DNA interactions using surface plasmon resonance-enhanced fluorescence spectroscopy. , 2001, Biosensors & bioelectronics.

[45]  Ye Fang,et al.  Resonant waveguide grating biosensor for whole-cell GPCR assays. , 2009, Methods in molecular biology.

[46]  Rebecca L Rich,et al.  Survey of the year 2007 commercial optical biosensor literature , 2008, Journal of molecular recognition : JMR.

[47]  George C Schatz,et al.  Screening of type I and II drug binding to human cytochrome P450-3A4 in nanodiscs by localized surface plasmon resonance spectroscopy. , 2009, Analytical chemistry.

[48]  Thierry Livache,et al.  Clinically related protein-peptide interactions monitored in real time on novel peptide chips by surface plasmon resonance imaging. , 2006, Clinical chemistry.

[49]  J P Landry,et al.  Protein reactions with surface-bound molecular targets detected by oblique-incidence reflectivity difference microscopes. , 2008, Applied optics.

[50]  Walter Huber,et al.  Fragment-Based Screening Using Surface Plasmon Resonance Technology , 2009, Journal of biomolecular screening.

[51]  Ravi F. Saraf,et al.  Approach to sequence DNA without tagging , 2001, Complex Adaptive Structures.

[52]  S. Benita,et al.  A quantitative evaluation of the molecular binding affinity between a monoclonal antibody conjugated to a nanoparticle and an antigen by surface plasmon resonance. , 2010, European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V.

[53]  Yung-Shin Sun,et al.  Fluorescent labeling agents change binding profiles of glycan-binding proteins. , 2011, Molecular bioSystems.

[54]  Florian Pröll,et al.  Direct optical detection in fragment-based screening , 2009, Analytical and bioanalytical chemistry.

[55]  A. Asanov,et al.  Regenerable biosensor platform: a total internal reflection fluorescence cell with electrochemical control. , 1998, Analytical chemistry.

[56]  R. Schasfoort,et al.  Biomolecular interaction monitoring of autoantibodies by scanning surface plasmon resonance microarray imaging. , 2007, Journal of the American Chemical Society.

[57]  Kit S Lam,et al.  Screening small-molecule compound microarrays for protein ligands without fluorescence labeling with a high-throughput scanning microscope. , 2010, Journal of biomedical optics.

[58]  Xiangdong Zhu,et al.  Oblique incidence reflectivity difference as an in situ probe of Co electrodeposition on polycrystalline Au , 2003 .

[59]  J P Landry,et al.  Macromolecular scaffolds for immobilizing small molecule microarrays in label-free detection of protein-ligand interactions on solid support. , 2009, Analytical chemistry.

[60]  Rebecca L Rich,et al.  Survey of the year 2003 commercial optical biosensor literature , 2005, Journal of molecular recognition : JMR.

[61]  Hui-bin Lu,et al.  General theory of optical reflection from a thin film on a solid and its application to heteroepitaxy , 2007 .

[62]  H. Kawagishi,et al.  Analysis of the carbohydrate binding specificity of the mushroom Pleurotus ostreatus lectin by surface plasmon resonance. , 2005, Analytical biochemistry.

[63]  Ravi F. Saraf,et al.  An approach to sequence DNA without tagging , 2002 .

[64]  Gang Jin,et al.  Investigation of interaction between two neutralizing monoclonal antibodies and SARS virus using biosensor based on imaging ellipsometry , 2006, Biomedical microdevices.

[65]  T. Kodadek Protein microarrays: prospects and problems. , 2001, Chemistry & biology.

[66]  Gavin MacBeath,et al.  Protein microarrays and proteomics , 2002, Nature Genetics.

[67]  L. Tjeng,et al.  Insulating state and the importance of the spin-orbit coupling in Ca3CoRhO6 , 2007, 0705.4538.

[68]  A. Crofts,et al.  Protein-lipid interactions in zein films investigated by surface plasmon resonance. , 2003, Journal of agricultural and food chemistry.

[69]  Andreas Brecht,et al.  Interferometric immunoassay in a FIA-system: a sensitive and rapid approach in label-free immunosensing , 1993 .

[70]  H. Zhang,et al.  Detection of hepatitis B virus markers using a biosensor based on imaging ellipsometry , 2009, Journal of viral hepatitis.

[71]  Donghyun Kim,et al.  Grating-based surface plasmon resonance detection of core-shell nanoparticle mediated DNA hybridization. , 2012, Biosensors & bioelectronics.

[72]  Y.S. Sun,et al.  Effect of fluorescently labeling protein probes on kinetics of protein-ligand reactions , 2008, 2008 Conference on Lasers and Electro-Optics and 2008 Conference on Quantum Electronics and Laser Science.

[73]  Satoko Yamashita,et al.  Determination of Biotinylated Proteins as an Index for Purification of Plasma Membrane using Surface Plasmon Resonance-based Optical Biosensor , 2005, Cytotechnology.

[74]  Lifang Xu,et al.  Binary and ternary binding affinities between exonuclease-deficient Klenow fragment (Kf-exo(-)) and various arylamine DNA lesions characterized by surface plasmon resonance. , 2012, Chemical research in toxicology.

[75]  M. Wirth,et al.  Direct monitoring of molecular recognition processes using fluorescence enhancement at colloid‐coated microplates , 2001, Journal of molecular recognition : JMR.

[76]  M. Gerstein,et al.  Global Analysis of Protein Activities Using Proteome Chips , 2001, Science.

[77]  P. Katsamba,et al.  Analyzing a kinetic titration series using affinity biosensors. , 2006, Analytical biochemistry.