论文信息 - VisBOL: Web-Based Tools for Synthetic Biology Design Visualization.

VisBOL: Web-Based Tools for Synthetic Biology Design Visualization.

VisBOL is a Web-based application that allows the rendering of genetic circuit designs, enabling synthetic biologists to visually convey designs in SBOL visual format. VisBOL designs can be exported to formats including PNG and SVG images to be embedded in Web pages, presentations and publications. The VisBOL tool enables the automated generation of visualizations from designs specified using the Synthetic Biology Open Language (SBOL) version 2.0, as well as a range of well-known bioinformatics formats including GenBank and Pigeoncad notation. VisBOL is provided both as a user accessible Web site and as an open-source (BSD) JavaScript library that can be used to embed diagrams within other content and software.

[1] Christopher A. Voigt,et al. Principles of genetic circuit design , 2014, Nature Methods.

[2] Swapnil Bhatia,et al. Pigeon: a design visualizer for synthetic biology. , 2013, ACS synthetic biology.

[3] Zhen Zhang,et al. Synthetic Biology Open Language (SBOL) Version 2.0.0. , 2015, Journal of integrative bioinformatics.

[4] David A. Duce,et al. Scalable Vector Graphics SVG 1.0 Specification , 2000 .

[5] Zhen Zhang,et al. Synthetic Biology Open Language (SBOL) Version 2.1.0 , 2016, J. Integr. Bioinform..

[6] C Burks,et al. The GenBank genetic sequence data bank. , 1988, Nucleic acids research.

[7] Manish Kushwaha,et al. A portable expression resource for engineering cross-species genetic circuits and pathways , 2015, Nature Communications.

[8] Deepak Chandran,et al. TinkerCell: modular CAD tool for synthetic biology , 2009, Journal of biological engineering.

[9] Jos Vanderleyden,et al. RNA-binding proteins involved in post-transcriptional regulation in bacteria , 2015, Front. Microbiol..

[10] Nils J. Nilsson,et al. A Formal Basis for the Heuristic Determination of Minimum Cost Paths , 1968, IEEE Trans. Syst. Sci. Cybern..

[11] Allan Kuchinsky,et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology , 2014, Nature Biotechnology.