Hydrophobic solvation of methane and nonbond parameters of the TIP3P water model

In the process of studying the solvation of simple hydrocarbons, we found that the nonbond van der Waals (vdw) parameters for the TIP3P water model could be adjusted without significantly changing its liquid water properties. By increasing the van der Waals well depth ϵ from 0.152 kcal/mol for the TIP3P model to 0.190 kcal/mol (model TIP3P_MOD), the solvation free energy of all‐atom methane changed from 2.5 kcal/mol to 2.1 kcal/mol, much closer to the experimental value of 2.0 kcal/mol. This change of van der Waals parameters does not change hydrophilic solvation, since calculations using either water model lead to the same relative solvation free energy between ethane and methanol. The solvation free‐energy differences between methane and ethane and between ethane and propane have also been calculated with both models, and results found with the two water models are similar. For the united‐atom hydrocarbon model, however, the solvation free energy of methane changed from 2.1 kcal/mol with TIP3P to 1.8 kcal/mol with TIP3P_MOD. © 1995 by John Wiley & Sons, Inc.

[1]  S. Lifson,et al.  Consistent force field studies of intermolecular forces in hydrogen-bonded crystals. 1. Carboxylic acids, amides, and the C:O.cntdot..cntdot..cntdot.H- hydrogen bonds , 1979 .

[2]  William L. Jorgensen,et al.  Optimized intermolecular potential functions for liquid hydrocarbons , 1984 .

[3]  J. Banavar,et al.  Computer Simulation of Liquids , 1988 .

[4]  Charles L. Brooks,et al.  Thermodynamics of aqueous solvation: Solution properties of alcohols and alkanes , 1987 .

[5]  J. M. Nelson,et al.  On the Mechanism of the Catechol—Tyrosinase1 Reaction , 1938 .

[6]  A. Warshel,et al.  Consistent Force Field Calculations. II. Crystal Structures, Sublimation Energies, Molecular and Lattice Vibrations, Molecular Conformations, and Enthalpies of Alkanes , 1970 .

[7]  W. L. Jorgensen,et al.  Monte Carlo simulation of differences in free energies of hydration , 1985 .

[8]  P. Kollman,et al.  Application of RESP charges to calculate conformational energies, hydrogen bond energies, and free energies of solvation , 1993 .

[9]  Donald E. Williams Repulsion Center of a Bonded Hydrogen Atom , 1965 .

[10]  Alan K. Soper,et al.  A new determination of the structure of water at 25°C , 1986 .

[11]  W. J. Meath,et al.  The H2O-H2O dispersion energy constant and the dispersion of the specific refractivity of dilute water vapour , 1975 .

[12]  Peter A. Kollman,et al.  Simulation of the solvation free energies for methane, ethane, and propane and corresponding amino acid dipeptides : a critical test of the bond-PMF correction, a new set of hydrocarbon parameters, and the gas phase-water hydrophobicity scale , 1992 .

[13]  Arieh Ben-Naim,et al.  Solvation thermodynamics of nonionic solutes , 1984 .

[14]  H. Berendsen,et al.  COMPUTER-SIMULATION OF MOLECULAR-DYNAMICS - METHODOLOGY, APPLICATIONS, AND PERSPECTIVES IN CHEMISTRY , 1990 .

[15]  H. Berendsen,et al.  Interaction Models for Water in Relation to Protein Hydration , 1981 .

[16]  Robert Zwanzig,et al.  Rate processes with dynamical disorder , 1990 .

[17]  H. Scheraga,et al.  Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occurring amino acids , 1975 .

[18]  W. L. Jorgensen,et al.  Comparison of simple potential functions for simulating liquid water , 1983 .