The Maximum Similarity Partitioning Problem and its Application in the Transcriptome Reconstruction and Quantification Problem
暂无分享,去创建一个
Eloi Araujo | Said Sadique Adi | Alex Z. Zaccaron | Carlos H. A. Higa | Burton H. Bluhm | S. S. Adi | B. Bluhm | Elói Araújo
[1] Tao Jiang,et al. IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly - (Extended Abstract) , 2011, RECOMB.
[2] Zhong Wang,et al. Next-generation transcriptome assembly , 2011, Nature Reviews Genetics.
[3] Pavel A. Pevzner,et al. Computational molecular biology : an algorithmic approach , 2000 .
[4] R. Guigó,et al. Modelling and simulating generic RNA-Seq experiments with the flux simulator , 2012, Nucleic acids research.
[5] TieLiu Shi,et al. Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq , 2013, Science China Life Sciences.
[6] James B. Brown,et al. Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation , 2011, Proceedings of the National Academy of Sciences.
[7] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[8] Gunnar Rätsch,et al. MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples , 2013, Bioinform..
[9] David S. Johnson,et al. Computers and Intractability: A Guide to the Theory of NP-Completeness , 1978 .
[10] N. Friedman,et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.
[11] J. Rinn,et al. Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs , 2010, Nature Biotechnology.
[12] Orion J. Buske,et al. iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data , 2013, Genome research.
[13] Martin Vingron,et al. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels , 2012, Bioinform..
[14] M. Gerstein,et al. RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.
[15] J. Rinn,et al. Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs , 2010, Nature biotechnology.
[16] G. Sherlock,et al. Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads , 2010, BMC Genomics.