Reconstruction of plant–pollinator networks from observational data

Empirical measurements of ecological networks such as food webs and mutualistic networks are often rich in structure but also noisy and error-prone, particularly for rare species for which observations are sparse. Focusing on the case of plant–pollinator networks, we here describe a Bayesian statistical technique that allows us to make accurate estimates of network structure and ecological metrics from such noisy observational data. Our method yields not only estimates of these quantities, but also estimates of their statistical errors, paving the way for principled statistical analyses of ecological variables and outcomes. We demonstrate the use of the method with an application to previously published data on plant–pollinator networks in the Seychelles archipelago, calculating estimates of network structure, network nestedness, and other characteristics.

[1]  Colin Fontaine,et al.  Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks , 2010, Science.

[2]  Y. Moreno,et al.  Breaking the spell of nestedness , 2017, bioRxiv.

[3]  M. E. J. Newman,et al.  Network structure from rich but noisy data , 2017, Nature Physics.

[4]  Ignasi Bartomeus,et al.  Understanding Linkage Rules in Plant-Pollinator Networks by Using Hierarchical Models That Incorporate Pollinator Detectability and Plant Traits , 2013, PloS one.

[5]  William S. Dorn,et al.  Editor's Preview… , 1969, CSUR.

[6]  M. E. J. Newman,et al.  Estimating network structure from unreliable measurements , 2018, Physical Review E.

[7]  Y. Moreno,et al.  Breaking the spell of nestedness , 2017, bioRxiv.

[8]  Jochen Fründ,et al.  Sampling bias is a challenge for quantifying specialization and network structure: lessons from a quantitative niche model , 2016 .

[9]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[10]  Jaboury Ghazoul,et al.  The tolerance of island plant–pollinator networks to alien plants , 2011 .

[11]  Jordi Bascompte,et al.  Plant-Animal Mutualistic Networks: The Architecture of Biodiversity , 2007 .

[12]  Jochen Fründ,et al.  What do interaction network metrics tell us about specialization and biological traits? , 2008, Ecology.

[13]  Jeff Ollerton,et al.  Pollinator Diversity: Distribution, Ecological Function, and Conservation , 2017 .

[14]  John K Kruschke,et al.  Bayesian data analysis. , 2010, Wiley interdisciplinary reviews. Cognitive science.

[15]  D. Vázquez,et al.  Evaluating sampling completeness in a desert plant-pollinator network. , 2012, The Journal of animal ecology.

[16]  A Rivera-Hutinel,et al.  Effects of sampling completeness on the structure of plant-pollinator networks. , 2012, Ecology.

[17]  P ? ? ? ? ? ? ? % ? ? ? ? , 1991 .

[18]  Luciano Cagnolo,et al.  Uniting pattern and process in plant-animal mutualistic networks: a review. , 2009, Annals of botany.

[19]  J. Biesmeijer,et al.  Safeguarding pollinators and their values to human well-being , 2016, Nature.

[20]  Joseph Tzanopoulos,et al.  Long-term observation of a pollination network: fluctuation in species and interactions, relative invariance of network structure and implications for estimates of specialization. , 2008, Ecology letters.

[21]  Tanya Y. Berger-Wolf,et al.  Network Structure Inference, A Survey , 2016, ACM Comput. Surv..

[22]  Neo D. Martinez,et al.  Allometric scaling enhances stability in complex food webs. , 2006, Ecology letters.

[23]  Fernanda S Valdovinos,et al.  Mutualistic networks: moving closer to a predictive theory. , 2019, Ecology letters.

[24]  Nico Blüthgen,et al.  Ecosystem restoration strengthens pollination network resilience and function , 2017, Nature.

[25]  Klaudia Frankfurter,et al.  The Coevolutionary Process , 2016 .

[26]  Neo D. Martinez Artifacts or Attributes? Effects of Resolution on the Little Rock Lake Food Web , 1991 .

[27]  Jiqiang Guo,et al.  Stan: A Probabilistic Programming Language. , 2017, Journal of statistical software.

[28]  Neo D. Martinez,et al.  Niche partitioning due to adaptive foraging reverses effects of nestedness and connectance on pollination network stability. , 2016, Ecology letters.

[29]  Tiago P. Peixoto Reconstructing networks with unknown and heterogeneous errors , 2018, Physical Review X.

[30]  Carlos J. Melián,et al.  The nested assembly of plant–animal mutualistic networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[31]  Neal M. Williams,et al.  Species abundance and asymmetric interaction strength in ecological networks , 2007 .

[32]  Kazuhiro Takemoto,et al.  Ecological Networks , 2019, Encyclopedia of Bioinformatics and Computational Biology.

[33]  Jennifer A. Dunne,et al.  How to monitor ecological communities cost-efficiently: The example of plant–pollinator networks , 2010 .

[34]  Rodrigo Ramos-Jiliberto,et al.  Consequences of adaptive behaviour for the structure and dynamics of food webs. , 2010, Ecology letters.

[35]  Nico Blüthgen,et al.  Why network analysis is often disconnected from community ecology: A critique and an ecologist's guide , 2010 .

[36]  Jordi Bascompte,et al.  Ecological networks, nestedness and sampling effort , 2007 .

[37]  Michael Betancourt,et al.  A Conceptual Introduction to Hamiltonian Monte Carlo , 2017, 1701.02434.

[38]  Werner Ulrich,et al.  A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement , 2008 .