Evaluation of Normalization and Pre-Clustering Issues in a Novel Clustering Approach: Global Optimum Search with Enhanced Positioning
暂无分享,去创建一个
[1] Saeed Tavazoie,et al. Ras and Gpa2 Mediate One Branch of a Redundant Glucose Signaling Pathway in Yeast , 2004, PLoS biology.
[2] Jens Timmer,et al. Normalization of DNA-Microarray Data by Nonlinear Correlation Maximization , 2003, J. Comput. Biol..
[3] Christodoulos A. Floudas,et al. A retrofit approach for heat exchanger networks , 1989 .
[4] Gregory C. Thornwall,et al. The microarray explorer tool for data mining of cDNA microarrays: application for the mammary gland. , 2000, Nucleic acids research.
[5] Horace J Spencer,et al. Effect of Normalization on Significance Testing for Oligonucleotide Microarrays , 2004, Journal of biopharmaceutical statistics.
[6] A. Neumaier,et al. A global optimization method, αBB, for general twice-differentiable constrained NLPs — I. Theoretical advances , 1998 .
[7] Christodoulos A. Floudas,et al. Optimization of complex reactor networks—I. Isothermal operation , 1990 .
[8] C. Floudas. Nonlinear and Mixed-Integer Optimization: Fundamentals and Applications , 1995 .
[9] Sanjit K. Mitra,et al. Optimized LOWESS normalization parameter selection for DNA microarray data , 2004, BMC Bioinformatics.
[10] C. Adjiman,et al. A global optimization method, αBB, for general twice-differentiable constrained NLPs—II. Implementation and computational results , 1998 .
[11] C. Schlötterer,et al. Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons , 2006, Nucleic acids research.
[12] John Quackenbush,et al. Computational genetics: Computational analysis of microarray data , 2001, Nature Reviews Genetics.
[13] C. Floudas,et al. Global optimum search for nonconvex NLP and MINLP problems , 1989 .
[14] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[15] Ding-Zhu Du,et al. A Decision Criterion for the Optimal Number of Clusters in Hierarchical Clustering , 2003, J. Glob. Optim..
[16] Rappold,et al. Human Molecular Genetics , 1996, Nature Medicine.
[17] C. Floudas,et al. Synthesis of general distillation sequences : nonsharp separations , 1990 .
[18] J. Hoheisel,et al. Hybridisation based DNA screening on peptide nucleic acid (PNA) oligomer arrays. , 1997, Nucleic acids research.
[19] S. Dudoit,et al. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. , 2002, Nucleic acids research.
[20] Kwang-Hyun Cho,et al. Microarray data clustering based on temporal variation: FCV with TSD preclustering. , 2003, Applied bioinformatics.
[21] C. Li,et al. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[22] T. Speed,et al. Statistical issues in cDNA microarray data analysis. , 2003, Methods in molecular biology.
[23] Christodoulos A. Floudas,et al. Synthesis of flexible heat exchanger networks with uncertain flowrates and temperatures , 1987 .
[24] P. Brown,et al. Exploring the metabolic and genetic control of gene expression on a genomic scale. , 1997, Science.
[25] Christodoulos A. Floudas,et al. A novel clustering approach and prediction of optimal number of clusters: global optimum search with enhanced positioning , 2007, J. Glob. Optim..
[26] M. Rattray,et al. A model-based analysis of microarray experimental error and normalisation. , 2003, Nucleic acids research.
[27] K. Becker,et al. Analysis of microarray data using Z score transformation. , 2003, The Journal of molecular diagnostics : JMD.
[28] David H. Wolpert,et al. No free lunch theorems for optimization , 1997, IEEE Trans. Evol. Comput..
[29] Lisa Schneper,et al. Sense and sensibility: nutritional response and signal integration in yeast. , 2004, Current opinion in microbiology.
[30] Christodoulos A. Floudas,et al. Synthesis of distillation sequences with several multicomponent feed and product streams , 1988 .
[31] R. Tibshirani,et al. Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[32] Christodoulos A. Floudas,et al. APROS: Algorithmic Development Methodology for Discrete-Continuous Optimization Problems , 1989, Oper. Res..
[33] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..