Measures for interoperability of phenotypic data: minimum information requirements and formatting
暂无分享,去创建一个
Uwe Scholz | Matthias Lange | Pascal Neveu | Astrid Junker | Cezary Mazurek | Fabio Fiorani | Elizabeth Arnaud | Susanna-Assunta Sansone | Philippe Rocca-Serra | Daniel Arend | Björn Usadel | Stephan Weise | Wojciech Frohmberg | Thomas Altmann | Cyril Pommier | Guillaume Cornut | Paul Kersey | Dijun Chen | Ümit Seren | Hanna Ćwiek-Kupczyńska | Paweł Krajewski | Jan van Oeveren | Marco van Schriek | Christian Klukas | Anahita Nafissi | Hendrik Poorter | Matthias Lange | P. Kersey | Susanna-Assunta Sansone | P. Rocca-Serra | B. Usadel | A. Junker | F. Fiorani | H. Poorter | E. Arnaud | C. Klukas | C. Pommier | U. Scholz | P. Krajewski | S. Weise | T. Altmann | Dijun Chen | P. Neveu | J. van Oeveren | M. van Schriek | Daniel Arend | Ümit Seren | C. Mazurek | Hanna Ćwiek-Kupczyńska | G. Cornut | Wojciech Frohmberg | Anahita Nafissi | Guillaume Cornut | Christian Klukas
[1] A. Baron. Experimental Designs , 1990, The Behavior analyst.
[2] Helen Parkinson,et al. MIAME/Plant – adding value to plant microarrray experiments , 2006, Plant Methods.
[3] Pelin Yilmaz,et al. The genomic standards consortium: bringing standards to life for microbial ecology , 2011, The ISME Journal.
[4] Aneta Sawikowska,et al. Quantitative Trait Loci for Yield and Yield-Related Traits in Spring Barley Populations Derived from Crosses between European and Syrian Cultivars , 2016, PloS one.
[5] Uwe Scholz,et al. PGP repository: a plant phenomics and genomics data publication infrastructure , 2016, Database J. Biol. Databases Curation.
[6] Ute Roessner,et al. Minimum reporting standards for plant biology context information in metabolomic studies , 2007, Metabolomics.
[7] B. Usadel,et al. Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. , 2009, Plant, cell & environment.
[8] Hadi Quesneville,et al. GnpIS: an information system to integrate genetic and genomic data from plants and fungi , 2013, Database J. Biol. Databases Curation.
[9] Jane Hunter,et al. PODD: An Ontology-Driven Data Repository for Collaborative Phenomics Research , 2010, ICADL.
[10] Arllet M. Portugal,et al. Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice , 2012, Front. Physio..
[11] Uwe Scholz,et al. Data Management Experiences and Best Practices from the Perspective of a Plant Research Institute , 2014, DILS.
[12] Nigel W. Hardy,et al. The metabolomics standards initiative (MSI) , 2007, Metabolomics.
[13] Uwe Scholz,et al. Quantitative monitoring of Arabidopsis thaliana growth and development using high-throughput plant phenotyping , 2016, Scientific Data.
[14] Erik Schultes,et al. The FAIR Guiding Principles for scientific data management and stewardship , 2016, Scientific Data.
[15] Hilla Peretz,et al. The , 1966 .
[16] William G. Cochran,et al. Experimental Designs, 2nd Edition , 1950 .
[17] Uwe Scholz,et al. e!DAL - a framework to store, share and publish research data , 2014, BMC Bioinformatics.
[18] A. Alercia,et al. FAO/Bioversity Multi-Crop Passport Descriptors V.2.1 [MCPD V.2.1] - December 2015 , 2015 .
[19] John McNeill,et al. International code of botanical nomenclature (Vienna Code) : adopted by the Seventeenth International Botanical Congress, Vienna, Austria, July 2005 , 2006 .
[20] B. Hammond. Ontology , 2004, Lawrence Booth’s Book of Visions.
[21] Daniel R. Zerbino,et al. Ensembl regulation resources , 2016, Database J. Biol. Databases Curation.
[22] Oliver Hofmann,et al. ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level , 2010, Bioinform..
[23] Matthias Lange,et al. Towards recommendations for metadata and data handling in plant phenotyping. , 2015, Journal of experimental botany.
[24] Bjarni J. Vilhjálmsson,et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines , 2010 .
[25] P. Reich,et al. New handbook for standardised measurement of plant functional traits worldwide , 2013 .
[26] Lennart Martens,et al. The minimum information about a proteomics experiment (MIAPE) , 2007, Nature Biotechnology.
[27] Astrid Junker,et al. Optimizing experimental procedures for quantitative evaluation of crop plant performance in high throughput phenotyping systems , 2015, Front. Plant Sci..
[28] Matej Oresic,et al. Data standards can boost metabolomics research, and if there is a will, there is a way , 2015, Metabolomics.
[29] Susanna-Assunta Sansone,et al. Standard reporting requirements for biological samples in metabolomics experiments: environmental context , 2007, Metabolomics.
[30] Paul T. Spellman,et al. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB , 2006, BMC Bioinformatics.
[31] Fabio Fiorani,et al. The art of growing plants for experimental purposes: a practical guide for the plant biologist. , 2012, Functional plant biology : FPB.