Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis
暂无分享,去创建一个
Haidong Feng | Zach Hensel | Jie Xiao | Jie Xiao | Zach Hensel | H. Feng | B. Han | C. Hatem | Jin Wang | Jin Wang | Bo Han | Christine Hatem | Bo Han
[1] P. Swain,et al. Gene Regulation at the Single-Cell Level , 2005, Science.
[2] B. Wanner,et al. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[3] E. O’Shea,et al. Noise in protein expression scales with natural protein abundance , 2006, Nature Genetics.
[4] Landscape and global stability of nonadiabatic and adiabatic oscillations in a gene network. , 2012, Biophysical journal.
[5] A. D. Kaiser,et al. Control of λ Repressor Synthesis , 1971 .
[6] Wolynes,et al. Intermittency of single molecule reaction dynamics in fluctuating environments. , 1995, Physical review letters.
[7] J. Tobias,et al. The N-end rule in bacteria. , 1991, Science.
[8] Takeharu Nagai,et al. Shift anticipated in DNA microarray market , 2002, Nature Biotechnology.
[9] Sheldon M. Ross,et al. Stochastic Processes , 2018, Gauge Integral Structures for Stochastic Calculus and Quantum Electrodynamics.
[10] C. Lim,et al. Regulated Fluctuations in Nanog Expression Mediate Cell Fate Decisions in Embryonic Stem Cells , 2009, PLoS biology.
[11] S. Shen-Orr,et al. Network motifs in the transcriptional regulation network of Escherichia coli , 2002, Nature Genetics.
[12] Paul J. Choi,et al. Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells , 2010, Science.
[13] Johan Paulsson,et al. Non-genetic heterogeneity from stochastic partitioning at cell division , 2011, Nature Genetics.
[14] J. Hasty,et al. Effective temperature in stochastic kinetics and gene networks. , 2006, Biophysical journal.
[15] J. Onuchic,et al. Self-regulating gene: an exact solution. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[16] M. Ehrenberg,et al. Random signal fluctuations can reduce random fluctuations in regulated components of chemical regulatory networks. , 2000, Physical review letters.
[17] Diane K. Hawley,et al. Mechanism of activation of transcription initiation from the λPRM promoter , 1982 .
[18] A. Lévine,et al. Cellular levels of the prophage λ and 434 repressors , 1979 .
[19] Leor S Weinberger,et al. Stochastic gene expression as a molecular switch for viral latency. , 2009, Current opinion in microbiology.
[20] Kirsten L. Frieda,et al. A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell , 2008, Science.
[21] Vahid Shahrezaei,et al. Analytical distributions for stochastic gene expression , 2008, Proceedings of the National Academy of Sciences.
[22] Paul J. Choi,et al. Quantifying E. coli Proteome and Transcriptome with Single-molecule Sensitivity in Single Cells , 2011 .
[23] D. Tranchina,et al. Stochastic mRNA Synthesis in Mammalian Cells , 2006, PLoS biology.
[24] P. Swain,et al. Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[25] M. Ehrenberg,et al. Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[26] J. Tobias,et al. Cloning and functional analysis of the ubiquitin-specific protease gene UBP1 of Saccharomyces cerevisiae. , 1991, The Journal of biological chemistry.
[27] Ian B. Dodd,et al. Cooperativity in long-range gene regulation by the λ CI repressor , 2004 .
[28] Nacho Molina,et al. Mammalian Genes Are Transcribed with Widely Different Bursting Kinetics , 2011, Science.
[29] J. Paulsson,et al. Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression , 2008, Science.
[30] A. Sarai,et al. Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[31] N. Friedman,et al. Stochastic protein expression in individual cells at the single molecule level , 2006, Nature.
[32] Jeffrey W. Smith,et al. Stochastic Gene Expression in a Single Cell , 2022 .
[33] J. Paulsson. Summing up the noise in gene networks , 2004, Nature.
[34] D. Larson,et al. Single-RNA counting reveals alternative modes of gene expression in yeast , 2008, Nature Structural &Molecular Biology.
[35] H. Feng,et al. A new formulation of two-time correlation functions of Markov chains applied to gene networks , 2011 .
[36] M Ptashne,et al. Gene regulation at the right operator (OR) of bacteriophage lambda. II. OR1, OR2, and OR3: their roles in mediating the effects of repressor and cro. , 1980, Journal of molecular biology.
[37] M. Ptashne,et al. Gene regulation at the right operator (OR) bacteriophage lambda. I. OR3 and autogenous negative control by repressor. , 1980, Journal of molecular biology.
[38] Sheldon M. Ross,et al. VII – Bandit Processes , 1983 .
[39] X. Xie,et al. Probing Gene Expression in Live Cells, One Protein Molecule at a Time , 2006, Science.
[40] Statistics, pathways and dynamics of single molecule protein folding , 2003 .
[41] Mark Ptashne,et al. A Genetic Switch, Phage Lambda Revisited , 2004 .
[42] R. Segev,et al. GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI , 2011, Nature Genetics.
[43] Jin Wang,et al. Dynamics and intrinsic statistical fluctuations of a gene switch. , 2007, The journal of physical chemistry. B.
[44] E. Cox,et al. Real-Time Kinetics of Gene Activity in Individual Bacteria , 2005, Cell.
[45] Ertugrul M. Ozbudak,et al. Regulation of noise in the expression of a single gene , 2002, Nature Genetics.
[46] H. Feng,et al. Adiabatic and non-adiabatic non-equilibrium stochastic dynamics of single regulating genes. , 2011, The journal of physical chemistry. B.
[47] L. A. Sepúlveda,et al. Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene , 2010, Molecular systems biology.