Rapid disuse and denervation atrophy involve transcriptional changes similar to those of muscle wasting during systemic diseases

We previously identified a common set of genes, termed atrogenes, whose expression is coordinately induced or suppressed in muscle during systemic wasting states (fasting, cancer cachexia, renal failure, diabetes). To determine whether this transcriptional program also functions during atrophy resulting from loss of contractile activity and whether atrogene expression correlates with the rate of muscle weight loss, we used cDNA microarrays and RT‐polymerase chain reaction to analyze changes in mRNA from rat gastrocnemius during disuse atrophy induced by denervation or spinal cord isolation. Three days after Den or SI, the rate of muscle weight loss was greatest, and 78% of the atrogenes identified during systemic catabolic states were induced or repressed. Of particular interest were the large inductions of key ubiquitin ligases, atrogin‐1 (35‐to 44‐fold) and MuRF1 (12‐to 22‐fold), and the suppression of PGC‐1α and PGC‐1ᵦ coactivators (15‐fold). When atrophy slowed (day 14), the expression of 92% of these atrogenes returned toward basal levels. At 28 days, the atrophy‐inducing transcription factor, FoxO1, was still induced and may be important in maintaining the “atrophied” state. Thus, 1) the atrophy associated with systemic catabolic states and following disuse involves similar transcriptional adaptations; and 2) disuse atrophy proceeds through multiple phases corresponding to rapidly atrophying and atrophied muscles that involve distinct transcriptional patterns. Sacheck, J. M., Hyatt, J‐P. K., Raffaello, A., Jagoe, R. T., Roy, R. R., Edgerton, V. R., Lecker, S. H., Goldberg, A. L. Rapid disuse and denervation atrophy involve transcriptional changes similar to those of muscle wasting during systemic diseases. FASEB J. 21, 140–155 (2007)

[1]  Jiandie D. Lin,et al.  PGC-1α protects skeletal muscle from atrophy by suppressing FoxO3 action and atrophy-specific gene transcription , 2006, Proceedings of the National Academy of Sciences.

[2]  G. Lanfranchi,et al.  Denervation in murine fast-twitch muscle: short-term physiological changes and temporal expression profiling. , 2006, Physiological genomics.

[3]  D. Attaix,et al.  Altered responses in skeletal muscle protein turnover during aging in anabolic and catabolic periods. , 2005, The international journal of biochemistry & cell biology.

[4]  Wei Wei,et al.  Novel aspects on the regulation of muscle wasting in sepsis. , 2005, The international journal of biochemistry & cell biology.

[5]  Richard T. Lee,et al.  Transgenic Overexpression of Locally Acting Insulin-Like Growth Factor-1 Inhibits Ubiquitin-Mediated Muscle Atrophy in Chronic Left-Ventricular Dysfunction , 2005, Circulation research.

[6]  J. Babraj,et al.  Selective activation of AMPK‐PGC‐1α or PKB‐TSC2‐mTOR signaling can explain specific adaptive responses to endurance or resistance training‐like electrical muscle stimulation , 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[7]  P. Giresi,et al.  Identification of a molecular signature of sarcopenia. , 2005, Physiological genomics.

[8]  S. Powers,et al.  Mechanisms of disuse muscle atrophy: role of oxidative stress. , 2005, American journal of physiology. Regulatory, integrative and comparative physiology.

[9]  Hsin C. Lin,et al.  Insulin-like Growth Factor-1 (IGF-1) Inversely Regulates Atrophy-induced Genes via the Phosphatidylinositol 3-Kinase/Akt/Mammalian Target of Rapamycin (PI3K/Akt/mTOR) Pathway* , 2005, Journal of Biological Chemistry.

[10]  S. Tågerud,et al.  Denervation‐induced alterations in gene expression in mouse skeletal muscle , 2005, The European journal of neuroscience.

[11]  W. Frontera,et al.  IKKβ/NF-κB Activation Causes Severe Muscle Wasting in Mice , 2004, Cell.

[12]  A. Goldberg,et al.  IGF-I stimulates muscle growth by suppressing protein breakdown and expression of atrophy-related ubiquitin ligases, atrogin-1 and MuRF1. , 2004, American journal of physiology. Endocrinology and metabolism.

[13]  Hiroyuki Aburatani,et al.  Skeletal Muscle FOXO1 (FKHR) Transgenic Mice Have Less Skeletal Muscle Mass, Down-regulated Type I (Slow Twitch/Red Muscle) Fiber Genes, and Impaired Glycemic Control*[boxs] , 2004, Journal of Biological Chemistry.

[14]  K. Reue,et al.  Lipin Expression Preceding Peroxisome Proliferator-activated Receptor-γ Is Critical for Adipogenesis in Vivo and in Vitro* , 2004, Journal of Biological Chemistry.

[15]  G. Yancopoulos,et al.  The IGF-1/PI3K/Akt pathway prevents expression of muscle atrophy-induced ubiquitin ligases by inhibiting FOXO transcription factors. , 2004, Molecular cell.

[16]  Marco Sandri,et al.  Foxo Transcription Factors Induce the Atrophy-Related Ubiquitin Ligase Atrogin-1 and Cause Skeletal Muscle Atrophy , 2004, Cell.

[17]  A. Goldberg,et al.  Multiple types of skeletal muscle atrophy involve a common program of changes in gene expression , 2004, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[18]  V. Edgerton,et al.  Effects of a mild weight-lifting program on the progress of glucocorticoid-induced atrophy in rat hindlimb muscles , 1980, Pflügers Archiv.

[19]  W. Kraus,et al.  PGC-1alpha mRNA expression is influenced by metabolic perturbation in exercising human skeletal muscle. , 2004, Journal of applied physiology.

[20]  W. Kraus,et al.  PGC-1α mRNA expression is influenced by metabolic perturbation in exercising human skeletal muscle , 2004 .

[21]  A. Russell,et al.  Endurance training in humans leads to fiber type-specific increases in levels of peroxisome proliferator-activated receptor-gamma coactivator-1 and peroxisome proliferator-activated receptor-alpha in skeletal muscle. , 2003, Diabetes.

[22]  Peyton Cook,et al.  Accurate and statistically verified quantification of relative mRNA abundances using SYBR Green I and real-time RT-PCR. , 2003, Journal of immunological methods.

[23]  V. Edgerton,et al.  Nerve activity-independent regulation of skeletal muscle atrophy: role of MyoD and myogenin in satellite cells and myonuclei. , 2003, American journal of physiology. Cell physiology.

[24]  P. Giresi,et al.  Global analysis of gene expression patterns during disuse atrophy in rat skeletal muscle , 2003, The Journal of physiology.

[25]  V. Edgerton,et al.  Atrophy responses to muscle inactivity. I. Cellular markers of protein deficits. , 2003, Journal of applied physiology.

[26]  P. Hasselgren,et al.  Sepsis upregulates the gene expression of multiple ubiquitin ligases in skeletal muscle. , 2003, The international journal of biochemistry & cell biology.

[27]  E. Hoffman,et al.  Patterns of global gene expression in rat skeletal muscle during unloading and low-intensity ambulatory activity. , 2003, Physiological genomics.

[28]  K. Ogawa,et al.  Regulation of TG-interacting factor by transforming growth factor-beta. , 2003, The Biochemical journal.

[29]  R. Paules,et al.  An integrated stress response regulates amino acid metabolism and resistance to oxidative stress. , 2003, Molecular cell.

[30]  M. Caligiuri,et al.  Tumor Necrosis Factor-regulated Biphasic Activation of NF-κB Is Required for Cytokine-induced Loss of Skeletal Muscle Gene Products* , 2002, The Journal of Biological Chemistry.

[31]  V. Edgerton,et al.  Atrophy responses to muscle inactivity. II. Molecular markers of protein deficits. , 2003, Journal of applied physiology.

[32]  L. Nolte,et al.  Adaptations of skeletal muscle to exercise: rapid increase in the transcriptional coactivator PGC‐1 , 2002, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[33]  D. Maclennan,et al.  Sarcolipin Overexpression in Rat Slow Twitch Muscle Inhibits Sarcoplasmic Reticulum Ca2+ Uptake and Impairs Contractile Function* , 2002, The Journal of Biological Chemistry.

[34]  A. Goldberg,et al.  Patterns of gene expression in atrophying skeletal muscles: response to food deprivation , 2002, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[35]  G. Taylor,et al.  P311 induces a TGF-beta1-independent, nonfibrogenic myofibroblast phenotype. , 2002, The Journal of clinical investigation.

[36]  Hui Zhong,et al.  Mechanical properties of the electrically silent adult rat soleus muscle , 2002, Muscle & nerve.

[37]  Jiandie D. Lin,et al.  Transcriptional co-activator PGC-1α drives the formation of slow-twitch muscle fibres , 2002, Nature.

[38]  S. Kandarian,et al.  Activation of an alternative NF‐ΚB pathway in skeletal muscle during disuse atrophy , 2002, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[39]  Jiandie D. Lin,et al.  Transcriptional co-activator PGC-1 alpha drives the formation of slow-twitch muscle fibres. , 2002, Nature.

[40]  A. Goldberg,et al.  Atrogin-1, a muscle-specific F-box protein highly expressed during muscle atrophy , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[41]  D J Glass,et al.  Identification of Ubiquitin Ligases Required for Skeletal Muscle Atrophy , 2001, Science.

[42]  Yi-Ping Li,et al.  Tumor necrosis factor-α and muscle wasting: a cellular perspective , 2001, Respiratory research.

[43]  J. Frystyk,et al.  Liver-specific igf-1 gene deletion leads to muscle insulin insensitivity. , 2001, Diabetes.

[44]  M. Pfaffl,et al.  A new mathematical model for relative quantification in real-time RT-PCR. , 2001, Nucleic acids research.

[45]  V. Edgerton,et al.  Temporal effects of inactivty on myosin heavy chain gene expression in rat slow muscle , 2001, Muscle & nerve.

[46]  Yudong D. He,et al.  Functional Discovery via a Compendium of Expression Profiles , 2000, Cell.

[47]  V. Edgerton,et al.  Persistence of myosin heavy chain‐based fiber types in innervated but silenced rat fast muscle , 2000, Muscle & nerve.

[48]  Simpkins Co,et al.  Metallothionein in human disease. , 2000 .

[49]  T. Pritts,et al.  The gene expression of ubiquitin ligase E3alpha is upregulated in skeletal muscle during sepsis in rats-potential role of glucocorticoids. , 2000, Biochemical and biophysical research communications.

[50]  C. Simpkins Metallothionein in human disease. , 2000, Cellular and molecular biology.

[51]  A. Goldberg,et al.  Ubiquitin conjugation by the N-end rule pathway and mRNAs for its components increase in muscles of diabetic rats. , 1999, The Journal of clinical investigation.

[52]  J. Weiner,et al.  Novel Dendritic Kinesin Sorting Identified by Different Process Targeting of Two Related Kinesins: KIF21A and KIF21B , 1999, The Journal of cell biology.

[53]  P. Hasselgren Glucocorticoids and muscle catabolism. , 1999, Current opinion in clinical nutrition and metabolic care.

[54]  Claudine Jurkovitz,et al.  Evaluation of signals activating ubiquitin-proteasome proteolysis in a model of muscle wasting. , 1999, American journal of physiology. Cell physiology.

[55]  R. Palmiter The elusive function of metallothioneins. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[56]  L. Baum,et al.  Galectins: versatile modulators of cell adhesion, cell proliferation, and cell death , 1998, Journal of Molecular Medicine.

[57]  V. Edgerton,et al.  Effects of inactivity on myosin heavy chain composition and size of rat soleus fibers , 1998, Muscle & nerve.

[58]  A. Goldberg,et al.  Inhibitors of the proteasome reduce the accelerated proteolysis in atrophying rat skeletal muscles. , 1997, The Journal of clinical investigation.

[59]  F. Haddad,et al.  The relationships among IGF-1, DNA content, and protein accumulation during skeletal muscle hypertrophy. , 1996, Journal of applied physiology.

[60]  A. Goldberg,et al.  Importance of the ATP-Ubiquitin-Proteasome Pathway in the Degradation of Soluble and Myofibrillar Proteins in Rabbit Muscle Extracts* , 1996, The Journal of Biological Chemistry.

[61]  L. Phillips,et al.  Muscle wasting in insulinopenic rats results from activation of the ATP-dependent, ubiquitin-proteasome proteolytic pathway by a mechanism including gene transcription. , 1996, The Journal of clinical investigation.

[62]  V. Preedy,et al.  The effect of endotoxin on skeletal muscle protein gene expression in the rat. , 1996, The international journal of biochemistry & cell biology.

[63]  W. Mitch,et al.  The acidosis of chronic renal failure activates muscle proteolysis in rats by augmenting transcription of genes encoding proteins of the ATP-dependent ubiquitin-proteasome pathway. , 1996, The Journal of clinical investigation.

[64]  S. Price,et al.  Necessary but not sufficient: the role of glucocorticoids in the acidosis-induced increase in levels of mRNAs encoding proteins of the ATP-dependent proteolytic pathway in rat muscle. , 1996, Mineral and electrolyte metabolism.

[65]  L. Henderson,et al.  Adaptation of nicotinic acetylcholine receptor, myogenin, and MRF4 gene expression to long-term muscle denervation , 1995, The Journal of cell biology.

[66]  A. Goldberg,et al.  Activation of the ATP-ubiquitin-proteasome pathway in skeletal muscle of cachectic rats bearing a hepatoma. , 1995, The American journal of physiology.

[67]  A. Goldberg,et al.  Increase in ubiquitin-protein conjugates concomitant with the increase in proteolysis in rat skeletal muscle during starvation and atrophy denervation. , 1995, The Biochemical journal.

[68]  A. Goldberg,et al.  Increase in levels of polyubiquitin and proteasome mRNA in skeletal muscle during starvation and denervation atrophy. , 1995, The Biochemical journal.

[69]  A. Riggs,et al.  Genomic Sequencing , 2010 .

[70]  Y. Itokawa,et al.  Trace element movement and oxidative stress in skeletal muscle atrophied by immobilization. , 1992, The American journal of physiology.

[71]  Hao-ming Shen Spherical reflector as an electromagnetic‐missile launcher , 1990 .

[72]  P. Chase,et al.  Different mechanisms of increased proteolysis in atrophy induced by denervation or unweighting of rat soleus muscle. , 1990, Metabolism: clinical and experimental.

[73]  A. Goldberg,et al.  Role of different proteolytic systems in the degradation of muscle proteins during denervation atrophy. , 1990, The Journal of biological chemistry.

[74]  F. Booth,et al.  Atrophy of the soleus muscle by hindlimb unweighting. , 1990, Journal of applied physiology.

[75]  F. Booth,et al.  Protein metabolism and beta-myosin heavy-chain mRNA in unweighted soleus muscle. , 1989, The American journal of physiology.

[76]  S. Jaspers,et al.  Role of glucocorticoids in the response of rat leg muscles to reduced activity , 1986, Muscle & nerve.

[77]  J. Sanes,et al.  Denervation supersensitivity in skeletal muscle: analysis with a cloned cDNA probe , 1984, The Journal of cell biology.

[78]  N. Robbins,et al.  Cell proliferation in denervated muscle: Identity and origin of dividing cells , 1982, Neuroscience.

[79]  D. DuBois,et al.  A possible role for glucocorticoids in denervation atrophy , 1981, Muscle & nerve.

[80]  A. Goldberg,et al.  Effects of food deprivation on protein synthesis and degradation in rat skeletal muscles. , 1976, The American journal of physiology.

[81]  A. Goldberg Protein turnover in skeletal muscle. II. Effects of denervation and cortisone on protein catabolism in skeletal muscle. , 1969, The Journal of biological chemistry.

[82]  S. S. Tower,et al.  Function and structure in the chronically isolated lumbo‐sacral spinal cord of the dog , 1937 .