A common switch in activation of the response regulators NtrC and PhoB: phosphorylation induces dimerization of the receiver modules.

During signal transduction, response regulators of two‐component systems are phosphorylated in a conserved receiver module. Phosphorylation induces activation of the non‐conserved output domain. We fused various domains of the response regulators NtrC, PhoB or CheB to the DNA binding domain of lambda repressor. Analysis of these hybrid proteins shows that the receiver modules of NtrC and PhoB are potential dimerization domains. In the unphosphorylated proteins, the ability of the receiver modules to dimerize is masked due to inhibition by their output domains. Inhibition can be relieved in two ways: phosphorylation of the receiver module or deletion of the output domain. In contrast, the receiver module of CheB lacks this ability for dimerization. We propose a model which groups response regulators into two classes. Common to both classes is the interaction between receiver and output domain in the unphosphorylated protein. In class I (e.g. NtrC and PhoB), this interaction leads to the inhibition of the receiver module. Phosphorylation relieves inhibition, thereby inducing activation via dimerization of the receiver modules. In class II (e.g. CheB), the interaction between receiver and output domain results in inhibition of the output domain. Phosphorylation relieves inhibition, thereby activating the output domain.

[1]  A. Ninfa,et al.  Reversible uridylylation of the Escherichia coli PII signal transduction protein regulates its ability to stimulate the dephosphorylation of the transcription factor nitrogen regulator I (NRI or NtrC). , 1994, The Journal of biological chemistry.

[2]  B. T. Nixon,et al.  Rhizobium meliloti DctD, a σ54‐dependent transcriptional activator, may be negatively controlled by a subdomain in the C‐terminal end of its two‐component receiver module , 1994, Molecular microbiology.

[3]  M. Simon,et al.  Protein histidine kinases and signal transduction in prokaryotes and eukaryotes. , 1994, Trends in genetics : TIG.

[4]  A. Wedel,et al.  Oligomerization of NTRC at the glnA enhancer is required for transcriptional activation. , 1993, Genes & development.

[5]  A. Ninfa,et al.  Mechanism of autophosphorylation of Escherichia coli nitrogen regulator II (NRII or NtrB): trans-phosphorylation between subunits , 1993, Journal of bacteriology.

[6]  D. Touati,et al.  Iron and oxygen regulation of Escherichia coli MnSOD expression: competition between the global regulators Fur and ArcA for binding to DNA , 1993, Molecular microbiology.

[7]  S. Kustu,et al.  Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein C , 1993, Journal of bacteriology.

[8]  A. Grossman,et al.  Integration of multiple developmental signals in Bacillus subtilis through the Spo0A transcription factor. , 1993, Genes & development.

[9]  T. Mizuno,et al.  Signal transduction between the two regulatory components involved in the regulation of the kdpABC operon in Escherichia coli: Phosphorylation‐dependent functioning of the positive regulator, KdpE , 1993, Molecular microbiology.

[10]  B. Wanner Gene regulation by phosphate in enteric bacteria , 1993, Journal of cellular biochemistry.

[11]  L. Reitzer,et al.  Effects of insertions and deletions in glnG (ntrC) of Escherichia coli on nitrogen regulator I-dependent DNA binding and transcriptional activation , 1993, Journal of bacteriology.

[12]  W. Boos,et al.  Mutations in phoB, the positive gene activator of the pho regulon in Escherichia coli, affect the carbohydrate phenotype on MacConkey indicator plates. , 1993, Research in microbiology.

[13]  A. Ninfa,et al.  Role of phosphorylated metabolic intermediates in the regulation of glutamine synthetase synthesis in Escherichia coli , 1992, Journal of bacteriology.

[14]  S. Austin,et al.  The prokaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylation and DNA dependent. , 1992, The EMBO journal.

[15]  B Magasanik,et al.  Phosphorylation of nitrogen regulator I of Escherichia coli induces strong cooperative binding to DNA essential for activation of transcription. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[16]  F. Ausubel,et al.  The central domain of Rhizobium leguminosarum DctD functions independently to activate transcription , 1992, Journal of bacteriology.

[17]  Jeffrey H. Miller,et al.  A short course in bacterial genetics , 1992 .

[18]  J. S. Parkinson,et al.  Communication modules in bacterial signaling proteins. , 1992, Annual review of genetics.

[19]  S. Kustu,et al.  The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription , 1991, Cell.

[20]  T. Mizuno,et al.  Signal transduction and osmoregulation in Escherichia coli. A novel type of mutation in the phosphorylation domain of the activator protein, OmpR, results in a defect in its phosphorylation-dependent DNA binding. , 1991, The Journal of biological chemistry.

[21]  D. Kahn,et al.  Modular structure of FixJ: homology of the transcriptional activator domain with the -35 binding domain of sigma factors. , 1991, Molecular microbiology.

[22]  S. Kustu,et al.  Prokaryotic transcriptional enhancers and enhancer-binding proteins. , 1991, Trends in biochemical sciences.

[23]  James C. Hu,et al.  Sequence requirements for coiled-coils: analysis with lambda repressor-GCN4 leucine zipper fusions. , 1990, Science.

[24]  A. Contreras,et al.  The function of isolated domains and chimaeric proteins constructed from the transcriptional activators NifA and NtrC of Klebsiella pneumoniae , 1990, Molecular microbiology.

[25]  T. Kawamoto,et al.  Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins. , 1989, Journal of molecular biology.

[26]  A. Ninfa,et al.  Protein phosphorylation and regulation of adaptive responses in bacteria. , 1989, Microbiological reviews.

[27]  P. V. von Hippel,et al.  Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.

[28]  S. Kustu,et al.  Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism. , 1989, Microbiological reviews.

[29]  A. Ninfa,et al.  Mutations in the glnG gene of Escherichia coli that result in increased activity of nitrogen regulator I , 1989, Journal of bacteriology.

[30]  M. Inouye,et al.  DNA-binding properties of the transcription activator (OmpR) for the upstream sequences of ompF in Escherichia coli are altered by envZ mutations and medium osmolarity , 1989, Journal of bacteriology.

[31]  A. Grossman,et al.  A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. , 1989, Microbiological reviews.

[32]  D. Szeto,et al.  Function of a bacterial activator protein that binds to transcriptional enhancers. , 1989, Science.

[33]  L. M. Albright,et al.  Prokaryotic signal transduction mediated by sensor and regulator protein pairs. , 1989, Annual review of genetics.

[34]  B. Magasanik Reversible phosphorylation of an enhancer binding protein regulates the transcription of bacterial nitrogen utilization genes. , 1988, Trends in biochemical sciences.

[35]  F. Dahlquist,et al.  N-terminal half of CheB is involved in methylesterase response to negative chemotactic stimuli in Escherichia coli , 1988, Journal of bacteriology.

[36]  V. Weiss,et al.  Phosphorylation of nitrogen regulator I (NRI) of Escherichia coli. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Robert B. Bourret,et al.  Histidine phosphorylation and phosphoryl group transfer in bacterial chemotaxis , 1988, Nature.

[38]  T. Hunter,et al.  The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. , 1988, Science.

[39]  S. Kustu,et al.  Protein kinase and phosphoprotein phosphatase activities of nitrogen regulatory proteins NTRB and NTRC of enteric bacteria: roles of the conserved amino-terminal domain of NTRC. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[40]  A. Contreras,et al.  The effect on the function of the transcriptional activator NtrC from Klebsiella pneumoniae of mutations in the DNA-recognition helix. , 1988, Nucleic acids research.

[41]  A. Ullrich,et al.  Growth factor receptor tyrosine kinases. , 1988, Annual review of biochemistry.

[42]  A. Gilman,et al.  G proteins: transducers of receptor-generated signals. , 1987, Annual review of biochemistry.

[43]  B. Magasanik,et al.  Role of glnB and glnD gene products in regulation of the glnALG operon of Escherichia coli , 1985, Journal of bacteriology.

[44]  J. Stock,et al.  Multiple forms of the CheB methylesterase in bacterial chemosensing. , 1985, The Journal of biological chemistry.

[45]  S. -. Park,et al.  The role of adenylyltransferase and uridylyltransferase in the regulation of glutamine synthetase in Escherichia coli. , 1985, Current topics in cellular regulation.

[46]  B. Magasanik,et al.  Isolation of the nitrogen assimilation regulator NR(I), the product of the glnG gene of Escherichia coli. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[47]  B. Magasanik,et al.  Transcription of ginA by purified Escherichia coli components: Core RNA polymerase and the products of glnF, ginG, and glnL , 2022 .

[48]  A. Ninfa,et al.  Covalent modification of the ginG product , NRI , by the glnL product , NRII , regulates the transcription of the glnALG operon in Escherichia coli ( glutamine synthetase / phosphorylation / nitrogen metabolism / positive control ) , 2022 .