Efficient estimation of energy transfer efficiency in light-harvesting complexes.

The fundamental physical mechanisms of energy transfer in photosynthetic complexes is not yet fully understood. In particular, the degree of efficiency or sensitivity of these systems for energy transfer is not known given their realistic with surrounding photonic and phononic environments. One major problem in studying light-harvesting complexes has been the lack of an efficient method for simulation of their dynamics in biological environments. To this end, here we revisit the second order time-convolution (TC2) master equation and examine its reliability beyond extreme Markovian and perturbative limits. In particular, we present a derivation of TC2 without making the usual weak system-bath coupling assumption. Using this equation, we explore the long-time behavior of exciton dynamics of Fenna-Matthews-Olson (FMO) portein complex. Moreover, we introduce a constructive error analysis to estimate the accuracy of TC2 equation in calculating energy transfer efficiency, exhibiting reliable performance for system-bath interactions with weak and intermediate memory and strength. Furthermore, we numerically show that energy transfer efficiency is optimal and robust for the FMO protein complex of green sulfur bacteria with respect to variations in reorganization energy and bath correlation time scales.

[1]  Hermann Haken,et al.  An exactly solvable model for coherent and incoherent exciton motion , 1973 .

[2]  V. M. Kenkre,et al.  Theory of Fast and Slow Excitation Transfer Rates , 1974 .

[3]  Miss A.O. Penney (b) , 1974, The New Yale Book of Quotations.

[4]  W. Farr Springer Tracts in Modern Physics , 1977 .

[5]  Vasudev M. Kenkre,et al.  Exciton Dynamics in Molecular Crystals and Aggregates , 1982 .

[6]  R. Pearlstein EXCITON MIGRATION AND TRAPPING IN PHOTOSYNTHESIS , 1982 .

[7]  T. G. Owens,et al.  Antenna size dependence of fluorescence decay in the core antenna of photosystem I: estimates of charge separation and energy transfer rates. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[8]  R. Kubo,et al.  Time Evolution of a Quantum System in Contact with a Nearly Gaussian-Markoffian Noise Bath , 1989 .

[9]  R. Parr Density-functional theory of atoms and molecules , 1989 .

[10]  W. Rugh Linear System Theory , 1992 .

[11]  S. Mukamel Principles of Nonlinear Optical Spectroscopy , 1995 .

[12]  D. Reichman,et al.  Cumulant expansions and the spin-boson problem , 1996, cond-mat/9609054.

[13]  Jianshu Cao,et al.  A phase-space study of Bloch–Redfield theory , 1997 .

[14]  V. May,et al.  Ultrafast Exciton Motion in Photosynthetic Antenna Systems: The FMO-Complex , 1998 .

[15]  K. Schulten,et al.  Kinetics of Excitation Migration and Trapping in the Photosynthetic Unit of Purple Bacteria , 2001 .

[16]  R. Xu,et al.  Theory of open quantum systems , 2002 .

[17]  Klaus Schulten,et al.  Excitons in a photosynthetic light-harvesting system: a combined molecular dynamics, quantum chemistry, and polaron model study. , 2001, Physical review. E, Statistical, nonlinear, and soft matter physics.

[18]  Seogjoo J. Jang,et al.  Fourth-order quantum master equation and its Markovian bath limit , 2002 .

[19]  C. Bauer,et al.  Complex evolution of photosynthesis. , 2003, Annual review of plant biology.

[20]  H. Cheung Resonance Energy Transfer , 2002 .

[21]  D. Lowe,et al.  A note on α-vacua and interacting field theory in de Sitter space , 2003, hep-th/0302050.

[22]  G. Fleming,et al.  Two-dimensional optical spectroscopy: two-color photon echoes of electronically coupled phthalocyanine dimers. , 2004, The Journal of chemical physics.

[23]  Volkhard May,et al.  Charge and Energy Transfer Dynamics in Molecular Systems, 2nd, Revised and Enlarged Edition , 2004 .

[24]  Seogjoo J. Jang,et al.  Multichromophoric Förster resonance energy transfer. , 2004, Physical review letters.

[25]  R. Grondelle,et al.  Energy-transfer dynamics in the LHCII complex of higher plants: Modified redfield approach , 2004 .

[26]  Volkhard May,et al.  Ultrafast Laser Pulse Control of Exciton Dynamics: A Computational Study on the FMO Complex† , 2004 .

[27]  Graham R. Fleming,et al.  Two-dimensional spectroscopy of electronic couplings in photosynthesis , 2005, Nature.

[28]  A. Ishizaki,et al.  Quantum Dynamics of System Strongly Coupled to Low-Temperature Colored Noise Bath: Reduced Hierarchy Equations Approach , 2005 .

[29]  Graham R Fleming,et al.  Exciton analysis in 2D electronic spectroscopy. , 2005, The journal of physical chemistry. B.

[30]  Graham R Fleming,et al.  Two-dimensional electronic spectroscopy of the B800–B820 light-harvesting complex , 2006, Proceedings of the National Academy of Sciences.

[31]  Y. Tanimura Stochastic Liouville, Langevin, Fokker–Planck, and Master Equation Approaches to Quantum Dissipative Systems , 2006 .

[32]  T. Renger,et al.  How proteins trigger excitation energy transfer in the FMO complex of green sulfur bacteria. , 2006, Biophysical journal.

[33]  T. Mančal,et al.  Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems , 2007, Nature.

[34]  R. Kubo A Stochastic Theory of Line Shape , 2007 .

[35]  B. Rabenstein,et al.  α-Helices direct excitation energy flow in the Fenna–Matthews–Olson protein , 2007, Proceedings of the National Academy of Sciences.

[36]  Hohjai Lee,et al.  Coherence Dynamics in Photosynthesis: Protein Protection of Excitonic Coherence , 2007, Science.

[37]  Gregory S Engel,et al.  Cross-peak-specific two-dimensional electronic spectroscopy , 2007, Proceedings of the National Academy of Sciences.

[38]  Seogjoo J. Jang,et al.  Multichromophoric Förster resonance energy transfer from b800 to b850 in the light harvesting complex 2: evidence for subtle energetic optimization by purple bacteria. , 2007, The journal of physical chemistry. B.

[39]  T. Renger,et al.  Refinement of a structural model of a pigment-protein complex by accurate optical line shape theory and experiments. , 2007, The journal of physical chemistry. B.

[40]  G. Fleming,et al.  Visualization of excitonic structure in the Fenna-Matthews-Olson photosynthetic complex by polarization-dependent two-dimensional electronic spectroscopy. , 2008, Biophysical journal.

[41]  J. Gilmore,et al.  Quantum dynamics of electronic excitations in biomolecular chromophores: role of the protein environment and solvent. , 2006, Journal of Physical Chemistry A.

[42]  S. Lloyd,et al.  Environment-assisted quantum walks in photosynthetic energy transfer. , 2008, The Journal of chemical physics.

[43]  Neil F. Johnson,et al.  Efficiency of energy transfer in a light-harvesting system under quantum coherence , 2007, 0708.1159.

[44]  M. B. Plenio,et al.  Dephasing-assisted transport: quantum networks and biomolecules , 2008, 0807.4902.

[45]  Seogjoo J. Jang,et al.  Theory of coherent resonance energy transfer. , 2008, The Journal of chemical physics.

[46]  G. Fleming,et al.  Quantum coherence enabled determination of the energy landscape in light-harvesting complex II. , 2009, The journal of physical chemistry. B.

[47]  A. Nazir Correlation-dependent coherent to incoherent transitions in resonant energy transfer dynamics. , 2009, Physical review letters.

[48]  R. Silbey,et al.  Optimization of exciton trapping in energy transfer processes. , 2009, The journal of physical chemistry. A.

[49]  Daniel A. Lidar,et al.  Maps for general open quantum systems and a theory of linear quantum error correction , 2009, 0902.2478.

[50]  Alexander Eisfeld,et al.  Influence of complex exciton-phonon coupling on optical absorption and energy transfer of quantum aggregates. , 2009, Physical review letters.

[51]  Emma Springate,et al.  Instantaneous mapping of coherently coupled electronic transitions and energy transfers in a photosynthetic complex using angle-resolved coherent optical wave-mixing. , 2009, Physical review letters.

[52]  G. Scholes,et al.  Coherent Intrachain Energy Migration in a Conjugated Polymer at Room Temperature , 2009, Science.

[53]  Qiang Shi,et al.  Efficient hierarchical Liouville space propagator to quantum dissipative dynamics. , 2009, The Journal of chemical physics.

[54]  Patrick Rebentrost,et al.  Non-Markovian quantum jumps in excitonic energy transfer. , 2009, The Journal of chemical physics.

[55]  R. Rosenfeld Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

[56]  G. Fleming,et al.  On the adequacy of the Redfield equation and related approaches to the study of quantum dynamics in electronic energy transfer. , 2009, The Journal of chemical physics.

[57]  Masoud Mohseni,et al.  Environment-assisted quantum transport , 2008, 0807.0929.

[58]  G. Fleming,et al.  Theoretical examination of quantum coherence in a photosynthetic system at physiological temperature , 2009, Proceedings of the National Academy of Sciences.

[59]  Masoud Mohseni,et al.  Role of quantum coherence and environmental fluctuations in chromophoric energy transport. , 2008, The journal of physical chemistry. B.

[60]  John Preskill,et al.  Fault-tolerant quantum computation versus Gaussian noise , 2008, 0810.4953.

[61]  Animesh Datta,et al.  Highly efficient energy excitation transfer in light-harvesting complexes: The fundamental role of n , 2009, 0901.4454.

[62]  G. Fleming,et al.  Unified treatment of quantum coherent and incoherent hopping dynamics in electronic energy transfer: reduced hierarchy equation approach. , 2009, The Journal of chemical physics.

[63]  J. Straub,et al.  Non‐Markovian Theory of Vibrational Energy Relaxation and its Applications to Biomolecular Systems , 2010, 1003.4796.

[64]  Alexandra Olaya-Castro,et al.  Distribution of entanglement in light-harvesting complexes and their quantum efficiency , 2010, 1003.3610.

[65]  W. Miller,et al.  Semiclassical Description of Electronic Excitation Population Transfer in a Model Photosynthetic System , 2010 .

[66]  X. Liang Excitation energy transfer: study with non-Markovian dynamics. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[67]  Van Vliet,et al.  Equilibrium and non-equilibrium statistical mechanics , 2010 .

[68]  G. Fleming,et al.  Quantum coherence and its interplay with protein environments in photosynthetic electronic energy transfer. , 2010, Physical chemistry chemical physics : PCCP.

[69]  K. B. Whaley,et al.  Quantum entanglement in photosynthetic light-harvesting complexes , 2009, 0905.3787.

[70]  R. Silbey,et al.  Efficient energy transfer in light-harvesting systems, I: optimal temperature, reorganization energy and spatial–temporal correlations , 2010, 1008.2236.

[71]  Javier Prior,et al.  Efficient simulation of strong system-environment interactions. , 2010, Physical review letters.

[72]  Animesh Datta,et al.  Entanglement and entangling power of the dynamics in light-harvesting complexes , 2009, 0912.0122.

[73]  P. Nalbach,et al.  Multiphonon transitions in the biomolecular energy transfer dynamics. , 2010, The Journal of chemical physics.

[74]  Gian Giacomo Guerreschi,et al.  Motional effects on the efficiency of excitation transfer , 2010, 1002.0346.

[75]  Gregory D. Scholes,et al.  Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature , 2010, Nature.

[76]  Justin R Caram,et al.  Long-lived quantum coherence in photosynthetic complexes at physiological temperature , 2010, Proceedings of the National Academy of Sciences.

[77]  Masoud Mohseni,et al.  Quantum state and process tomography of energy transfer systems via ultrafast spectroscopy , 2010, Proceedings of the National Academy of Sciences.

[78]  R. Silbey,et al.  Excitation energy transfer in a non-markovian dynamical disordered environment: localization, narrowing, and transfer efficiency. , 2011, The journal of physical chemistry. B.

[79]  S. Kais,et al.  Modified scaled hierarchical equation of motion approach for the study of quantum coherence in photosynthetic complexes. , 2010, The journal of physical chemistry. B.

[80]  Alán Aspuru-Guzik,et al.  Exciton-Phonon Information Flow in the Energy Transfer Process of Photosynthetic Complexes , 2010, 1011.3809.

[81]  W. Strunz,et al.  An efficient method to calculate excitation energy transfer in light-harvesting systems: application to the Fenna–Matthews–Olson complex , 2011, 1106.5259.

[82]  John Preskill,et al.  Combining dynamical decoupling with fault-tolerant quantum computation , 2009, 0911.3202.

[83]  V. May,et al.  Charge and Energy Transfer Dynamics in Molecular Systems: MAY:CHARGE TRANSFER 3ED O-BK , 2011 .

[84]  I. D. Vega Non-Markovian stochastic Schrödinger description of transport in quantum networks , 2011 .

[85]  P. Rebentrost,et al.  Atomistic study of the long-lived quantum coherences in the Fenna-Matthews-Olson complex. , 2011, Biophysical journal.

[86]  Dexter Kozen,et al.  New , 2020, MFPS.

[87]  Masoud Mohseni,et al.  Quantum Effects in Biology , 2019, Optics and Photonics News.