A simulator for spatially extended kappa models
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[1] James R. Faeder,et al. Compartmental rule-based modeling of biochemical systems , 2009, Proceedings of the 2009 Winter Simulation Conference (WSC).
[2] Vincent Danos,et al. Modelling Epigenetic Information Maintenance: A Kappa Tutorial , 2009, CAV.
[3] J. Elf,et al. Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases. , 2004, Systems biology.
[4] James R Faeder,et al. Kinetic Monte Carlo method for rule-based modeling of biochemical networks. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[5] Vincent Danos,et al. Rule-Based Modelling and Model Perturbation , 2009, Trans. Comp. Sys. Biology.
[6] D. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .
[7] Vincent Danos,et al. Rule-Based Modelling of Cellular Signalling , 2007, CONCUR.
[8] Vincent Danos. Agile Modelling of Cellular Signalling , 2008 .
[9] Vincent Danos,et al. Rule-Based Modelling, Symmetries, Refinements , 2008, FMSB.
[10] Vincent Danos,et al. Scalable Simulation of Cellular Signaling Networks , 2007, APLAS.
[11] Michael A. Gibson,et al. Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels , 2000 .
[12] Dan V. Nicolau,et al. Stochastic Simulation for Spatial Modelling of Dynamic Processes in a Living Cell , 2011 .
[13] Mario di Bernardo,et al. Design and Analysis of Biomolecular Circuits: Engineering Approaches to Systems and Synthetic Biology , 2011 .
[14] M Ander,et al. SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks. , 2004, Systems biology.
[15] Bernard Muschielok,et al. The 4MOST instrument concept overview , 2014, Astronomical Telescopes and Instrumentation.
[16] Måns Ehrenberg,et al. Mesoscopic reaction-diffusion in intracellular signaling , 2003, SPIE International Symposium on Fluctuations and Noise.
[17] Oksana Sorokina,et al. Towards a quantitative model of the post-synaptic proteome. , 2011, Molecular bioSystems.
[18] J. Elf,et al. Stochastic reaction-diffusion kinetics in the microscopic limit , 2010, Proceedings of the National Academy of Sciences.