Predicting and experimental evaluating bio-electrochemical synthesis - A case study with Clostridium kluyveri.

Microbial electrosynthesis is a highly promising application of microbial electrochemical technologies for the sustainable production of organic compounds. At the same time a multitude of questions need to be answered and challenges to be met. Central for its further development is using appropriate electroactive microorganisms and their efficient extracellular electron transfer (EET) as well as wiring of the metabolism to EET. Among others, Clostridia are believed to represent electroactive microbes being highly promising for microbial electrosynthesis. We investigated the potential steps and challenges for the bio-electrochemical fermentation (electro-fermentation) of mid-chain organic acids using Clostridium kluyveri. Starting from a metabolic model the potential limitations of the metabolism as well as beneficial scenarios for electrochemical stimulation were identified and experimentally investigated. C. kluyveri was shown to not be able to exchange electrons with an electrode directly. Therefore, exogenous mediators (2-hydroxy-1,4-naphthoquinone, potassium ferrocyanide, neutral red, methyl viologen, methylene blue, and the macrocyclic cobalt hexaamine [Co(trans-diammac)]3+) were tested for their toxicity and electro-fermentations were performed in 1L bioreactors covering 38 biotic and 8 abiotic runs. When using C. kluyveri and mediators, maximum absolute current densities higher than the abiotic controls were detected for all runs. At the same time, no significant impact on the cell metabolism (product formation, carbon recovery, growth rate) was found. From this observation, we deduce general potential limitations of electro-fermentations with C. kluyveri and discuss strategies to successfully overcome them.

[1]  J. Švitel,et al.  Determination of total sugars in lignocellulose hydrolysate by a mediated Gluconobacter oxydans biosensor , 2000 .

[2]  H. Ehrlich Are gram‐positive bacteria capable of electron transfer across their cell wall without an externally available electron shuttle? , 2008, Geobiology.

[3]  P. Dürre,et al.  Pathway engineering and synthetic biology using acetogens , 2012, FEBS letters.

[4]  B. Logan Exoelectrogenic bacteria that power microbial fuel cells , 2009, Nature Reviews Microbiology.

[5]  Youngsoon Um,et al.  Electricity-driven metabolic shift through direct electron uptake by electroactive heterotroph Clostridium pasteurianum , 2014, Scientific Reports.

[6]  Fuli Li,et al.  The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features , 2008, Proceedings of the National Academy of Sciences.

[7]  Sang Yup Lee,et al.  Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network , 2008, Applied Microbiology and Biotechnology.

[8]  M. Rosenbaum,et al.  Expanding the molecular toolkit for the homoacetogen Clostridium ljungdahlii , 2016, Scientific Reports.

[9]  Hubertus V. M. Hamelers,et al.  Bioelectrochemical Production of Caproate and Caprylate from Acetate by Mixed Cultures , 2013 .

[10]  K. Rabaey,et al.  Microbial electrosynthesis — revisiting the electrical route for microbial production , 2010, Nature Reviews Microbiology.

[11]  Nicolas Bernet,et al.  Electro-Fermentation: How To Drive Fermentation Using Electrochemical Systems. , 2016, Trends in biotechnology.

[12]  Bruce E Cohen,et al.  Engineering of a synthetic electron conduit in living cells , 2010, Proceedings of the National Academy of Sciences.

[13]  Sven Kerzenmacher,et al.  Unbalanced fermentation of glycerol in Escherichia coli via heterologous production of an electron transport chain and electrode interaction in microbial electrochemical cells. , 2015, Bioresource technology.

[14]  Falk Harnisch,et al.  Is there a Specific Ecological Niche for Electroactive Microorganisms , 2016 .

[15]  Jörg Stelling,et al.  Large-scale computation of elementary flux modes with bit pattern trees , 2008, Bioinform..

[16]  Henry Naveau,et al.  Clostridium autoethanogenum, sp. nov., an anaerobic bacterium that produces ethanol from carbon monoxide , 1994, Archives of Microbiology.

[17]  N. Tomlinson Carbon dioxide and acetate utilization by Clostridium kluyveri. III. A new path of glutamic acid synthesis. , 1954, The Journal of biological chemistry.

[18]  S. Schuster,et al.  ON ELEMENTARY FLUX MODES IN BIOCHEMICAL REACTION SYSTEMS AT STEADY STATE , 1994 .

[19]  O. Choi,et al.  Butyrate production enhancement by Clostridium tyrobutyricum using electron mediators and a cathodic electron donor , 2012, Biotechnology and bioengineering.

[20]  T. Hambley,et al.  6, 13-Diamino-6,13-dimethyl-1,4,8,11-tetra-azacyclotetradecane, L7, a new, potentially sexidentate polyamine ligand. Variable co-ordination to cobalt (III) and crystal structure of the complex[CO(L7)]Cl2[ClO4] , 1989 .

[21]  C. Buisman,et al.  Continuous Long‐Term Bioelectrochemical Chain Elongation to Butyrate , 2017 .

[22]  K. Rabaey,et al.  Continuous long-term electricity-driven bioproduction of carboxylates and isopropanol from CO2 with a mixed microbial community , 2017 .

[23]  Korneel Rabaey,et al.  Chain elongation in anaerobic reactor microbiomes to recover resources from waste. , 2014, Current opinion in biotechnology.

[24]  J. C. Thrash,et al.  Evidence for Direct Electron Transfer by a Gram-Positive Bacterium Isolated from a Microbial Fuel Cell , 2011, Applied and Environmental Microbiology.

[25]  Kelly P. Nevin,et al.  Electrobiocommodities: powering microbial production of fuels and commodity chemicals from carbon dioxide with electricity. , 2013, Current opinion in biotechnology.

[26]  L. T. Angenent,et al.  Shewanella oneidensis in a lactate-fed pure-culture and a glucose-fed co-culture with Lactococcus lactis with an electrode as electron acceptor. , 2011, Bioresource technology.

[27]  Kelly P. Nevin,et al.  Electrosynthesis of Organic Compounds from Carbon Dioxide Is Catalyzed by a Diversity of Acetogenic Microorganisms , 2011, Applied and Environmental Microbiology.

[28]  W. Verstraete,et al.  Metabolites produced by Pseudomonas sp. enable a Gram-positive bacterium to achieve extracellular electron transfer , 2008, Applied Microbiology and Biotechnology.

[29]  G. M. Smith,et al.  13C NMR studies of butyric fermentation in Clostridium kluyveri. , 1985, The Journal of biological chemistry.

[30]  Korneel Rabaey,et al.  Redox dependent metabolic shift in Clostridium autoethanogenum by extracellular electron supply , 2016, Biotechnology for Biofuels.

[31]  J E Bailey,et al.  Metabolic flux analysis with a comprehensive isotopomer model in Bacillus subtilis. , 2001, Biotechnology and bioengineering.

[32]  W. Moore,et al.  Acetone, Isopropanol, and Butanol Production by Clostridium beijerinckii (syn. Clostridium butylicum) and Clostridium aurantibutyricum , 1983, Applied and environmental microbiology.

[33]  H. May,et al.  Production of fuels and chemicals from waste by microbiomes. , 2013, Current opinion in biotechnology.

[34]  Susann Müller,et al.  Microbiomes in bioenergy production: from analysis to management. , 2014, Current opinion in biotechnology.

[35]  L. T. Angenent,et al.  Microbial electrochemistry and technology: terminology and classification , 2015 .

[36]  Derek R. Lovley,et al.  A Genetic System for Clostridium ljungdahlii: a Chassis for Autotrophic Production of Biocommodities and a Model Homoacetogen , 2012, Applied and Environmental Microbiology.

[37]  P. Dürre,et al.  Clostridium ljungdahlii represents a microbial production platform based on syngas , 2010, Proceedings of the National Academy of Sciences.

[38]  Nick Wierckx,et al.  Engineering mediator-based electroactivity in the obligate aerobic bacterium Pseudomonas putida KT2440 , 2015, Front. Microbiol..

[39]  Alain Bergel,et al.  Electrochemical reduction of oxygen catalyzed by a wide range of bacteria including Gram-positive , 2010 .

[40]  Frauke Kracke,et al.  Microbial electron transport and energy conservation – the foundation for optimizing bioelectrochemical systems , 2015, Front. Microbiol..

[41]  Michaela A. Teravest,et al.  Transforming exoelectrogens for biotechnology using synthetic biology , 2016, Biotechnology and bioengineering.

[42]  Falk Harnisch,et al.  Paving the way for bioelectrotechnology: Integrating electrochemistry into bioreactors , 2017, Engineering in life sciences.

[43]  Derek R. Lovley,et al.  Microbial Electrosynthesis: Feeding Microbes Electricity To Convert Carbon Dioxide and Water to Multicarbon Extracellular Organic Compounds , 2010, mBio.

[44]  Largus T. Angenent,et al.  Metabolite-based mutualism between Pseudomonas aeruginosaPA14 and Enterobacter aerogenes enhances current generation in bioelectrochemical systems , 2011 .

[45]  F. Harnisch,et al.  Evaluating the Feasibility of Microbial Electrosynthesis Based on Gluconobacter oxydans , 2016 .

[46]  Frauke Kracke,et al.  Identifying target processes for microbial electrosynthesis by elementary mode analysis , 2014, BMC Bioinformatics.

[47]  Alfred M Spormann,et al.  Enhanced microbial electrosynthesis by using defined co-cultures , 2016, The ISME Journal.

[48]  Philippe Soucaille,et al.  Metabolic engineering of Clostridium acetobutylicum for the industrial production of 1,3-propanediol from glycerol. , 2005, Metabolic engineering.

[49]  Masayoshi Iwahara,et al.  Application of Electro-energizing Method to l-Glutamic Acid Fermentation , 1979 .

[50]  B. T. Bornstein,et al.  The energy metabolism of Clostridium kluyveri and the synthesis of fatty acids. , 1948, The Journal of biological chemistry.