Permanent genetic access to transiently active neurons via TRAP: targeted recombination in active populations.

Targeting genetically encoded tools for neural circuit dissection to relevant cellular populations is a major challenge in neurobiology. We developed an approach, targeted recombination in active populations (TRAP), to obtain genetic access to neurons that were activated by defined stimuli. This method utilizes mice in which the tamoxifen-dependent recombinase CreER(T2) is expressed in an activity-dependent manner from the loci of the immediate early genes Arc and Fos. Active cells that express CreER(T2) can only undergo recombination when tamoxifen is present, allowing genetic access to neurons that are active during a time window of less than 12 hr. We show that TRAP can provide selective access to neurons activated by specific somatosensory, visual, and auditory stimuli and by experience in a novel environment. When combined with tools for labeling, tracing, recording, and manipulating neurons, TRAP offers a powerful approach for understanding how the brain processes information and generates behavior.

[1]  E. Friauf Tonotopic Order in the Adult and Developing Auditory System of the Rat as Shown by c‐fos Immunocytochemistry , 1992, The European journal of neuroscience.

[2]  A. Ryan,et al.  Effects of stimulus frequency and intensity on c‐fos mRNA expression in the adult rat auditory brainstem , 1999, The Journal of comparative neurology.

[3]  Hongkui Zeng,et al.  A Cre-Dependent GCaMP3 Reporter Mouse for Neuronal Imaging In Vivo , 2012, The Journal of Neuroscience.

[4]  K. Svoboda,et al.  Genetic Dissection of Neural Circuits , 2008, Neuron.

[5]  G. Shepherd The Synaptic Organization of the Brain , 1979 .

[6]  Sooyoung Chung,et al.  Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex , 2005, Nature.

[7]  Richard Paylor,et al.  Behavioral assessment of c-fos mutant mice , 1994, Brain Research.

[8]  B. Spiegelman,et al.  Null Mutation of c-fos Impairs Structural and Functional Plasticities in the Kindling Model of Epilepsy , 1996, The Journal of Neuroscience.

[9]  Raag D. Airan,et al.  Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures , 2010, Nature Protocols.

[10]  K. Deisseroth,et al.  Optogenetic stimulation of a hippocampal engram activates fear memory recall , 2012, Nature.

[11]  Jun Yan,et al.  Three-dimensional tonotopic organization of the C57 mouse cochlear nucleus , 2009, Hearing Research.

[12]  Bruce L. McNaughton,et al.  Environment-specific expression of the immediate-early gene Arc in hippocampal neuronal ensembles , 1999, Nature Neuroscience.

[13]  M. Greenberg,et al.  The regulation and function of c-fos and other immediate early genes in the nervous system , 1990, Neuron.

[14]  G. Lynch,et al.  Regional patterns of c-fos mRNA expression in rat hippocampus following exploration of a novel environment versus performance of a well-learned discrimination , 1995, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[15]  Kristina D. Micheva,et al.  Visualizing the Distribution of Synapses from Individual Neurons in the Mouse Brain , 2010, PloS one.

[16]  Mark Mayford,et al.  Localization of a Stable Neural Correlate of Associative Memory , 2007, Science.

[17]  Richard C Gerkin,et al.  Alteration of Neuronal Firing Properties after In Vivo Experience in a FosGFP Transgenic Mouse , 2004, The Journal of Neuroscience.

[18]  M. Mayford,et al.  The effect of autonomous alpha-CaMKII expression on sensory responses and experience-dependent plasticity in mouse barrel cortex , 2001, Neuropharmacology.

[19]  S. Finkbeiner,et al.  Arc regulates spine morphology and maintains network stability in vivo , 2010, Proceedings of the National Academy of Sciences.

[20]  Susumu Tonegawa,et al.  In Vivo Two-Photon Imaging Reveals a Role of Arc in Enhancing Orientation Specificity in Visual Cortex , 2006, Cell.

[21]  T. Curran,et al.  Mapping patterns of c-fos expression in the central nervous system after seizure. , 1987, Science.

[22]  J. Bossert,et al.  Targeted disruption of cocaine-activated accumbens neurons prevents context-specific sensitization , 2009, Nature Neuroscience.

[23]  G Leng,et al.  Induction of c-fos expression in hypothalamic magnocellular neurons requires synaptic activation and not simply increased spike activity , 1994, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[24]  J. Cadet,et al.  Null Mutation of c-fos Causes Exacerbation of Methamphetamine-Induced Neurotoxicity , 1999, The Journal of Neuroscience.

[25]  Ian R. Wickersham,et al.  Monosynaptic Restriction of Transsynaptic Tracing from Single, Genetically Targeted Neurons , 2007, Neuron.

[26]  S. Amir,et al.  Fos expression in rat visual cortex induced by ocular input of ultraviolet light , 1996, Brain Research.

[27]  Ian R. Wickersham,et al.  Cortical representations of olfactory input by trans-synaptic tracing , 2011, Nature.

[28]  David J. Anderson,et al.  Functional identification of an aggression locus in the mouse hypothalamus , 2010, Nature.

[29]  L. Maffei,et al.  Reduced Responsiveness to Long-Term Monocular Deprivation of Parvalbumin Neurons Assessed by c-Fos Staining in Rat Visual Cortex , 2009, PloS one.

[30]  C. Petersen The Functional Organization of the Barrel Cortex , 2007, Neuron.

[31]  M. Armstrong‐James,et al.  Flow of excitation within rat barrel cortex on striking a single vibrissa. , 1992, Journal of neurophysiology.

[32]  E. Wagner,et al.  Bone and haematopoietic defects in mice lacking c-fos , 1992, Nature.

[33]  L. Arckens,et al.  Differential expression of c‐fos in subtypes of GABAergic cells following sensory stimulation in the cat primary visual cortex , 2002, The European journal of neuroscience.

[34]  Allan R. Jones,et al.  A robust and high-throughput Cre reporting and characterization system for the whole mouse brain , 2009, Nature Neuroscience.

[35]  David C Rowland,et al.  Generation of a Synthetic Memory Trace , 2012, Science.

[36]  Dan D. Stettler,et al.  Representations of Odor in the Piriform Cortex , 2009, Neuron.

[37]  S. Robinson,et al.  Metabolites, pharmacodynamics, and pharmacokinetics of tamoxifen in rats and mice compared to the breast cancer patient. , 1991, Drug metabolism and disposition: the biological fate of chemicals.

[38]  Liqun Luo,et al.  Site-specific integrase-mediated transgenesis in mice via pronuclear injection , 2011, Proceedings of the National Academy of Sciences.

[39]  R. Fields,et al.  Specific regulation of immediate early genes by patterned neuronal activity , 1993, Journal of neuroscience research.

[40]  B. McNaughton,et al.  Sparse, environmentally selective expression of Arc RNA in the upper blade of the rodent fascia dentata by brief spatial experience , 2005, Hippocampus.

[41]  A. Schleicher,et al.  Exploration of a novel environment leads to the expression of inducible transcription factors in barrel-related columns , 2000, Neuroscience.

[42]  Allan R. Jones,et al.  A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing , 2012, Nature Neuroscience.

[43]  Richard J Smeyne,et al.  Fos-IacZ transgenic mice: Mapping sites of gene induction in the central nervous system , 1992, Neuron.

[44]  L. Kaczmarek,et al.  Sensory regulation of immediate–early gene expression in mammalian visual cortex: implications for functional mapping and neural plasticity , 1997, Brain Research Reviews.

[45]  B. Spiegelman,et al.  Pleiotropic effects of a null mutation in the c-fos proto-oncogene , 1992, Cell.

[46]  P Chambon,et al.  Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains. , 1997, Biochemical and biophysical research communications.

[47]  H. Okuno,et al.  Synaptic activity-responsive element in the Arc/Arg3.1 promoter essential for synapse-to-nucleus signaling in activated neurons , 2009, Proceedings of the National Academy of Sciences.

[48]  I. Nelken,et al.  Functional organization and population dynamics in the mouse primary auditory cortex , 2010, Nature Neuroscience.

[49]  Carol A Barnes,et al.  Arc, a growth factor and activity-regulated gene, encodes a novel cytoskeleton-associated protein that is enriched in neuronal dendrites , 1995, Neuron.

[50]  B. McNaughton,et al.  Thresholds for synaptic activation of transcription factors in hippocampus: correlation with long-term enhancement , 1993, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[51]  Thomas G. Oertner,et al.  Temporal Control of Immediate Early Gene Induction by Light , 2009, PloS one.