Quantum‐Dot‐Tagged Bioresponsive Hydrogel Suspension Array for Multiplex Label‐Free DNA Detection

A novel hydrogel suspension array, which possesses the joint advantages of quantum‐dot‐encoded technology, bioresponsive hydrogels, and photonic crystal sensors with full multiplexing label‐free DNA detection capability is developed. The microcarriers of the suspension array are quantum‐dot‐tagged DNA‐responsive hydrogel photonic beads. In the case of label‐free DNA detection, specific hybridization of target DNA and the crosslinked single‐stranded DNA in the hydrogel grid will cause hydrogel shrinking, which can be detected as a corresponding blue shift in the Bragg diffraction peak position of the beads that can be used for quantitatively estimating the amount of target DNA. The results of the label‐free DNA detection show that the suspension array has high selectivity and sensitivity with a detection limit of 10−9 M. This method has the potential to provide low cost, miniaturization, and simple and real‐time monitoring of hybridization reaction platforms for detecting genetic variations and sequencing genes.

[1]  M. M. Alam,et al.  SWELLING BEHAVIOR OF ACRYLAMIDE HYDROGEL IN DIFFERENT SOLVENTS AND pHs , 2011 .

[2]  Zhong-Ze Gu,et al.  Multiplex label-free detection of biomolecules with an imprinted suspension array. , 2009, Angewandte Chemie.

[3]  Seung-Man Yang,et al.  Holographic fabrication of microstructures with internal nanopatterns using microprism arrays. , 2009, Angewandte Chemie.

[4]  Yuanjin Zhao,et al.  Colloidal crystal beads coated with multicolor CdTe quantum dots: microcarriers for optical encoding and fluorescence enhancement , 2009 .

[5]  O. Velev,et al.  Materials Fabricated by Micro‐ and Nanoparticle Assembly – The Challenging Path from Science to Engineering , 2009 .

[6]  Z. Gu,et al.  Quantum-dot-coated encoded silica colloidal crystals beads for multiplex coding. , 2009, Chemical communications.

[7]  Michael J Sailor,et al.  Multiplexed DNA detection using spectrally encoded porous SiO2 photonic crystal particles. , 2009, Analytical chemistry.

[8]  Zhongze Gu,et al.  Encoded Porous Beads for Label‐Free Multiplex Detection of Tumor Markers , 2009, Advanced materials.

[9]  Zhongze Gu,et al.  Multiplex detection of tumor markers with photonic suspension array. , 2009, Analytica chimica acta.

[10]  Michael J. Sailor,et al.  Real-time monitoring of enzyme activity in a mesoporous silicon double layer , 2009, Nature nanotechnology.

[11]  A. Neogi,et al.  Electric field enhanced photoluminescence of CdTe quantum dots encapsulated in poly (N-isopropylacrylamide) nano-spheres. , 2008, Optics express.

[12]  Qing Liao,et al.  Ultrasensitive DNA detection using photonic crystals. , 2008, Angewandte Chemie.

[13]  Lei Jiang,et al.  Bio‐Inspired, Smart, Multiscale Interfacial Materials , 2008 .

[14]  Nathan G. Clack,et al.  Electrostatic readout of DNA microarrays with charged microspheres , 2008, Nature Biotechnology.

[15]  W. Tan,et al.  Engineering target-responsive hydrogels based on aptamer-target interactions. , 2008, Journal of the American Chemical Society.

[16]  Haiyang Tang,et al.  Incorporating fluorescent quantum dots into water-soluble polymer , 2008 .

[17]  Zhongze Gu,et al.  Encoded silica colloidal crystal beads as supports for potential multiplex immunoassay. , 2008, Analytical chemistry.

[18]  M. Sailor,et al.  Optical‐Fiber‐Mounted Porous Silicon Photonic Crystals for Sensing Organic Vapor Breakthrough in Activated Carbon , 2007 .

[19]  F. Simmel,et al.  Controlled trapping and release of quantum dots in a DNA-switchable hydrogel. , 2007, Small.

[20]  Mildred K. Cho,et al.  The Future of Personal Genomics , 2007, Science.

[21]  Rein V. Ulijn,et al.  Enzyme‐Responsive Polymer Hydrogel Particles for Controlled Release , 2007 .

[22]  L. Schmidt‐Mende,et al.  ZnO - nanostructures, defects, and devices , 2007 .

[23]  Mehmet Toner,et al.  Multifunctional Encoded Particles for High-Throughput Biomolecule Analysis , 2007, Science.

[24]  Zhibing Hu,et al.  Fabrication of monodisperse gel shells and functional microgels in microfluidic devices. , 2007, Angewandte Chemie.

[25]  David G Spiller,et al.  Encoded microcarriers for high-throughput multiplexed detection. , 2006, Angewandte Chemie.

[26]  André C. Arsenault,et al.  DNA Designer Defects in Photonic Crystals: Optically Monitored Biochemistry , 2006 .

[27]  S. Kingsmore Multiplexed protein measurement: technologies and applications of protein and antibody arrays , 2006, Nature Reviews Drug Discovery.

[28]  Takashi Miyata,et al.  Tumor marker-responsive behavior of gels prepared by biomolecular imprinting , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Mizuo Maeda,et al.  DNA-responsive hydrogels that can shrink or swell. , 2005, Biomacromolecules.

[30]  H. Möhwald,et al.  Fabrication of Multicolor‐Encoded Microspheres by Tagging Semiconductor Nanocrystals to Hydrogel Spheres , 2005 .

[31]  Shuming Nie,et al.  Quantum dot-encoded mesoporous beads with high brightness and uniformity: rapid readout using flow cytometry. , 2004, Analytical chemistry.

[32]  Andrew Ustianowski,et al.  Tropical infectious diseases: Diagnostics for the developing world , 2004, Nature Reviews Microbiology.

[33]  Kevin Braeckmans,et al.  Encoding microcarriers by spatial selective photobleaching , 2003, Nature materials.

[34]  Michael J Sailor,et al.  Biomolecular screening with encoded porous-silicon photonic crystals , 2002, Nature Materials.

[35]  R. G. Freeman,et al.  Submicrometer metallic barcodes. , 2001, Science.

[36]  S. Nie,et al.  Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules , 2001, Nature Biotechnology.

[37]  Darryn Bryant,et al.  Toward larger chemical libraries: Encoding with fluorescent colloids in combinatorial chemistry , 2000 .

[38]  S. Asher,et al.  Polymerized colloidal crystal hydrogel films as intelligent chemical sensing materials , 1997, Nature.

[39]  John D. Mackenzie,et al.  Room temperature optical gain in sol‐gel derived CdS quantum dots , 1996 .

[40]  John P Nolan,et al.  Suspension array technology: evolution of the flat-array paradigm. , 2002, Trends in biotechnology.