MycoCosm portal: gearing up for 1000 fungal genomes
暂无分享,去创建一个
Inna Dubchak | Henrik Nordberg | Tatyana Smirnova | Frank Korzeniewski | Alan Kuo | Robert Otillar | Xueling Zhao | Igor V. Grigoriev | Roman Nikitin | Sajeet Haridas | Robin A. Ohm | Robert Riley | Asaf A. Salamov | Igor Shabalov | A. Salamov | I. Dubchak | R. Riley | I. Grigoriev | A. Kuo | S. Haridas | R. Ohm | Frank Korzeniewski | Robert Otillar | Henrik Nordberg | R. Nikitin | Xu Zhao | Tatyana Smirnova | I. Shabalov | Roman Nikitin | Igor Shabalov
[1] María Martín,et al. Activities at the Universal Protein Resource (UniProt) , 2013, Nucleic Acids Res..
[2] M. Blackwell. The fungi: 1, 2, 3 ... 5.1 million species? , 2011, American journal of botany.
[3] Justin Powlowski,et al. Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris , 2011, Nature Biotechnology.
[4] F. Martin,et al. The Ecological Genomics of Fungi , 2013 .
[5] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[6] Peter Schattner,et al. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs , 2005, Nucleic Acids Res..
[7] Vincent Lombard,et al. Genome sequence of the model mushroom Schizophyllum commune , 2010, Nature Biotechnology.
[8] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[9] Edith D. Wong,et al. Saccharomyces Genome Database: the genomics resource of budding yeast , 2011, Nucleic Acids Res..
[10] Lior Pachter,et al. VISTA: computational tools for comparative genomics , 2004, Nucleic Acids Res..
[11] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[12] I. Grigoriev. A Changing Landscape of Fungal Genomics , 2013 .
[13] M. Borodovsky,et al. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. , 2008, Genome research.
[14] A. Salamov,et al. Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi , 2012, PLoS pathogens.
[15] A. Salamov,et al. The Plant Cell Wall–Decomposing Machinery Underlies the Functional Diversity of Forest Fungi , 2011, Science.
[16] Jodie J. Yin,et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes , 2004, Genome Biology.
[17] Ni Li,et al. Gene Ontology Annotations and Resources , 2012, Nucleic Acids Res..
[18] Wendy S. Schackwitz,et al. Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa , 2011, G3: Genes | Genomes | Genetics.
[19] David L. Hawksworth,et al. The fungal dimension of biodiversity: magnitude, significance, and conservation , 1991 .
[20] I-Min A. Chen,et al. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata , 2011, Nucleic Acids Res..
[21] Paramvir S. Dehal,et al. Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis , 2011, PLoS genetics.
[22] Christina A. Cuomo,et al. Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici , 2011 .
[23] D. Hibbett,et al. Fueling the future with fungal genomics , 2011 .
[24] S. Brunak,et al. SignalP 4.0: discriminating signal peptides from transmembrane regions , 2011, Nature Methods.
[25] Mary Goldman,et al. The UCSC Genome Browser database: extensions and updates 2013 , 2012, Nucleic Acids Res..
[26] V. Solovyev,et al. Ab initio gene finding in Drosophila genomic DNA. , 2000, Genome research.
[27] Inna Dubchak,et al. The genome portal of the Department of Energy Joint Genome Institute: 2014 updates , 2013, Nucleic Acids Res..
[28] Y. Van de Peer,et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis , 2008, Nature.
[29] Katherine H. Huang,et al. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 , 2004, Nature Biotechnology.
[30] Jean-Michel Claverie,et al. FusionDB: a database for in-depth analysis of prokaryotic gene fusion events , 2004, Nucleic Acids Res..
[31] Susumu Goto,et al. KEGG for integration and interpretation of large-scale molecular data sets , 2011, Nucleic Acids Res..
[32] Christina A. Cuomo,et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi , 2011, Proceedings of the National Academy of Sciences.
[33] Marcus C. Chibucos,et al. The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources , 2011, Nucleic Acids Res..
[34] S E Baker,et al. Sequencing the fungal tree of life. , 2011, The New phytologist.
[35] The UniProt Consortium,et al. Update on activities at the Universal Protein Resource (UniProt) in 2013 , 2012, Nucleic Acids Res..
[36] Robert D. Finn,et al. InterPro: the integrative protein signature database , 2008, Nucleic Acids Res..
[37] Albee Y. Ling,et al. The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes , 2012, Science.
[38] Asaf Salamov,et al. Fungal Genomic Annotation , 2006 .
[39] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[40] I-Min A. Chen,et al. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata , 2007, Nucleic Acids Res..
[41] Ning Ma,et al. BLAST: a more efficient report with usability improvements , 2013, Nucleic Acids Res..