Study of DNA hybridization on polypyrrole grafted with oligonucleotides by photocurrent spectroscopy.

Recognition of DNA sequences by biochemical sensor is generally performed by analysis after completion of hybridization. Using a technique able to directly translate the biological event into an electrical signal allows the in situ monitoring of the hybridization kinetics. In this aim, the photoelectrochemical behavior of one electroactive polymeric sensor based on a copolymer of polypyrrole and polypyrrole-oligonucleotide has been investigated in aqueous solution. This sensor has been studied as such (i) and in two other situations: (ii) when the copolymer is in presence of non-complementary oligonucleotides; and (iii) when the copolymer is in presence of complementary oligonucleotides. From the photocurrent spectra obtained at -0.6 V/SCE versus incident energy the allowed direct and indirect transitions for each polymer have been evidenced. The photocurrent evolution during hybridization and adsorption processes has been recorded in real time and the hybridization kinetics has revealed to be comparable with mass variations obtained by quartz crystal microbalance under the same experimental conditions.

[1]  Lloyd M. Smith,et al.  In Situ Surface Plasmon Resonance Imaging Detection of DNA Hybridization to Oligonucleotide Arrays on Gold Surfaces , 1997 .

[2]  Hafsa Korri-Youssoufi,et al.  Toward Bioelectronics: Specific DNA Recognition Based on an Oligonucleotide-Functionalized Polypyrrole , 1997 .

[3]  Wolfgang W. Gärtner,et al.  Depletion-Layer Photoeffects in Semiconductors , 1959 .

[4]  T. Livache,et al.  Polypyrrole DNA chip on a silicon device: example of hepatitis C virus genotyping. , 1998, Analytical biochemistry.

[5]  S Neidle,et al.  Detection and kinetic studies of triplex formation by oligodeoxynucleotides using real-time biomolecular interaction analysis (BIA). , 1995, Nucleic acids research.

[6]  J. Schultze Semiconductor electrodes (studies in physical and theoretical chemistry 55) : By H. O. Finklea Elsevier, Amsterdam, 520 pp. Dfl 340.00 , 1990 .

[7]  B. D. Malhotra,et al.  Recent studies of heterocyclic and aromatic conducting polymers , 1986 .

[8]  Yong Yang,et al.  The photoelectrochemical behavior of polypyrrole films in non-aqueous solutions , 1994 .

[9]  Thierry Delair,et al.  Toward intelligent polymers: DNA sensors based on oligonucleotide-functionalized polypyrroles , 1999 .

[10]  J Wang,et al.  Nucleic-acid immobilization, recognition and detection at chronopotentiometric DNA chips. , 1997, Biosensors & bioelectronics.

[11]  D. Guyomard Mise au Principes de base de l'électrochimie des semi-conducteurs , 1986 .

[12]  Mian Jiang,et al.  Toward Genolelectronics: Nucleic Acid Doped Conducting Polymers , 2000 .

[13]  C. Brett,et al.  An EIS study of DNA-modified electrodes , 1999 .

[14]  R. Triboulet,et al.  Electrochemical Behavior of an Aqueous Electrolyte/I‐Doped ZnSe Junction in the Dark and under Illumination , 1979 .

[15]  Gustavo Rivas,et al.  Stripping potentiometric transduction of DNA hybridization processes , 1996 .

[16]  V. Erokhin,et al.  Quartz balance DNA sensor. , 1997, Biosensors & bioelectronics.

[17]  E. Souteyrand,et al.  DIRECT DETECTION OF THE HYBRIDIZATION OF SYNTHETIC HOMO-OLIGOMER DNA SEQUENCES BY FIELD EFFECT , 1997 .

[18]  P. Caillat,et al.  Electroconducting polymers for the construction of DNA or peptide arrays on silicon chips. , 1998, Biosensors & bioelectronics.

[19]  Joseph Wang,et al.  Dendritic Nucleic Acid Probes for DNA Biosensors , 1998 .

[20]  T. Livache,et al.  Preparation of a DNA matrix via an electrochemically directed copolymerization of pyrrole and oligonucleotides bearing a pyrrole group. , 1994, Nucleic acids research.

[21]  L. Abrantes,et al.  Photoelectrochemical studies of polymer films: Poly(3-methylthiophene) and poly(3-methylthiophene)/Cu systems , 1996 .

[22]  Michael A. Butler,et al.  Photoelectrolysis and physical properties of the semiconducting electrode WO2 , 1977 .

[23]  D. Ginley,et al.  The photoelectrolysis of water using iron titanate anodes , 1977 .