Investigating the Thermostability of Mycoplasma Arginine Deiminase: a Protein Simulation Approach

[1]  Mohammad Hossein Morowvat,et al.  Cell Penetrating Peptide: Sequence-Based Computational Prediction for Intercellular Delivery of Arginine Deiminase , 2020 .

[2]  Mohammad Hossein Morowvat,et al.  Computational Analysis of Arginine Deiminase Sequences to Provide a Guideline for Protein Engineering , 2020 .

[3]  Yuguo Zheng,et al.  Recent advances in the improvement of enzyme thermostability by structure modification , 2020, Critical reviews in biotechnology.

[4]  Rui Zhang,et al.  Convolution Neural Network-Based Prediction of Protein Thermostability , 2019, J. Chem. Inf. Model..

[5]  Mohammad Hossein Morowvat,et al.  In silico analysis of different signal peptides for secretory production of arginine deiminase in Escherichia coli. , 2019, Recent patents on biotechnology.

[6]  Mohammad Hossein Morowvat,et al.  Arginine Deiminase: Current Understanding and Applications. , 2019, Recent patents on biotechnology.

[7]  Mohammad Hossein Morowvat,et al.  Decreasing the immunogenicity of arginine deiminase enzyme via structure‐based computational analysis , 2019, Journal of biomolecular structure & dynamics.

[8]  Mohammad Hossein Morowvat,et al.  Medium Optimization for Recombinant Soluble Arginine Deiminase Expression in Escherichia coli Using Response Surface Methodology. , 2018, Current pharmaceutical biotechnology.

[9]  Radka Svobodová Vařeková,et al.  PDBsum: Structural summaries of PDB entries , 2017, Protein science : a publication of the Protein Society.

[10]  Paul A. Dalby,et al.  Two strategies to engineer flexible loops for improved enzyme thermostability , 2017, Scientific Reports.

[11]  M. Gonchar,et al.  Novel arginine deiminase-based method to assay L-arginine in beverages. , 2016, Food chemistry.

[12]  Bela Stantic,et al.  EASE-MM: Sequence-Based Prediction of Mutation-Induced Stability Changes with Feature-Based Multiple Models. , 2016, Journal of molecular biology.

[13]  Asif U. Tamuri,et al.  ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments , 2016, Nucleic acids research.

[14]  Liming Liu,et al.  Enzymatic production of l-citrulline by hydrolysis of the guanidinium group of l-arginine with recombinant arginine deiminase. , 2015, Journal of biotechnology.

[15]  Darren R. Flower,et al.  AllerTOP v.2—a server for in silico prediction of allergens , 2014, Journal of Molecular Modeling.

[16]  Marco Biasini,et al.  SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information , 2014, Nucleic Acids Res..

[17]  Mallur S. Madhusudhan,et al.  Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins , 2013, Nucleic Acids Res..

[18]  Chaok Seok,et al.  GalaxyWEB server for protein structure prediction and refinement , 2012, Nucleic Acids Res..

[19]  B. Ranjbar,et al.  Enhanced activity and stability in the presence of organic solvents by increased active site polarity and stabilization of a surface loop in a metalloprotease. , 2010, Journal of biochemistry.

[20]  Tal Pupko,et al.  ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids , 2010, Nucleic Acids Res..

[21]  P. Ruiz,et al.  An association of lower serum citrulline levels within 30 days of acute rejection in patients following small intestine transplantation. , 2006, Transplantation proceedings.

[22]  Chris Oostenbrink,et al.  A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force‐field parameter sets 53A5 and 53A6 , 2004, J. Comput. Chem..

[23]  A. D. Clark,et al.  Crystal structures of arginine deiminase with covalent reaction intermediates; implications for catalytic mechanism. , 2004, Structure.

[24]  T. Darden,et al.  Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .

[25]  M Levitt,et al.  A model of the molten globule state from molecular dynamics simulations. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[26]  S. Beck,et al.  Arginine Deprivation With Pegylated Arginine Deiminase in Patients With Argininosuccinate Synthetase 1–Deficient Malignant Pleural Mesothelioma: A Randomized Clinical Trial , 2017, JAMA oncology.

[27]  B. Matthews,et al.  Structural and genetic analysis of protein stability. , 1993, Annual review of biochemistry.