Quantum chemical investigation of hydrogen‐bond strengths and partition into donor and acceptor contributions
暂无分享,去创建一个
[1] T. Halgren. Merck molecular force field. II. MMFF94 van der Waals and electrostatic parameters for intermolecular interactions , 1996 .
[2] Parr,et al. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. , 1988, Physical review. B, Condensed matter.
[3] Hans-Joachim Böhm,et al. LUDI: rule-based automatic design of new substituents for enzyme inhibitor leads , 1992, J. Comput. Aided Mol. Des..
[4] D. J. Price,et al. Assessing scoring functions for protein-ligand interactions. , 2004, Journal of medicinal chemistry.
[5] Thomas Lengauer,et al. Evaluation of the FLEXX incremental construction algorithm for protein–ligand docking , 1999, Proteins.
[6] M. Plesset,et al. Note on an Approximation Treatment for Many-Electron Systems , 1934 .
[7] Hans W. Horn,et al. ELECTRONIC STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS: THE PROGRAM SYSTEM TURBOMOLE , 1989 .
[8] A. Stone. Universal Models of Hydrogen Bonding , 2000 .
[9] Hans W. Horn,et al. Fully optimized contracted Gaussian basis sets for atoms Li to Kr , 1992 .
[10] Alexander D. MacKerell,et al. An ab Initio Quantum Mechanical Study of Hydrogen-Bonded Complexes of Biological Interest , 2002 .
[11] G. Jansen,et al. A quantitative measure of bond polarity from the electron localization function and the theory of atoms in molecules , 2001 .
[12] John A. Pople,et al. Approximate fourth-order perturbation theory of the electron correlation energy , 1978 .
[13] Thomas Frauenheim,et al. Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory based treatment , 2001 .
[14] Hans-Joachim Böhm,et al. Prediction of binding constants of protein ligands: A fast method for the prioritization of hits obtained from de novo design or 3D database search programs , 1998, J. Comput. Aided Mol. Des..
[15] Jirí Cerný,et al. Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs. , 2006, Physical chemistry chemical physics : PCCP.
[16] Pavel Hobza,et al. True stabilization energies for the optimal planar hydrogen-bonded and stacked structures of guanine...cytosine, adenine...thymine, and their 9- and 1-methyl derivatives: complete basis set calculations at the MP2 and CCSD(T) levels and comparison with experiment. , 2003, Journal of the American Chemical Society.
[17] S. Grimme. Semiempirical hybrid density functional with perturbative second-order correlation. , 2006, The Journal of chemical physics.
[18] F. Wennmohs,et al. Theoretical investigation of weak hydrogen bonds to sulfur , 2003 .
[19] F. Escudero,et al. Atoms in molecules , 1982 .
[20] A. Becke. Density-functional thermochemistry. III. The role of exact exchange , 1993 .
[21] S. F. Boys,et al. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors , 1970 .
[22] G. A. Jeffrey,et al. An Introduction to Hydrogen Bonding , 1997 .
[23] Angela K. Wilson,et al. Gaussian basis sets for use in correlated molecular calculations. IX. The atoms gallium through krypton , 1993 .
[24] N. L. Allinger,et al. Hydrogen bonding in MM2 , 1988 .
[25] A. Daniel Boese,et al. Predicting the binding energies of H-bonded complexes: A comparative DFT study , 1999 .
[26] S. Xantheas. Recent theoretical and experimental advances in hydrogen bonded clusters , 2000 .
[27] W. Kohn,et al. Self-Consistent Equations Including Exchange and Correlation Effects , 1965 .
[28] W. L. Jorgensen,et al. Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids , 1996 .
[29] Y. Mo. Probing the nature of hydrogen bonds in DNA base pairs , 2006, Journal of molecular modeling.
[30] N. Kestner. He–He Interaction in the SCF–MO Approximation , 1968 .
[31] P. Kollman,et al. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules , 1995 .
[32] K. Merz,et al. Large-scale validation of a quantum mechanics based scoring function: predicting the binding affinity and the binding mode of a diverse set of protein-ligand complexes. , 2005, Journal of medicinal chemistry.
[33] T. H. Dunning. Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen , 1989 .
[34] Florian Weigend,et al. Auxiliary basis sets for main row atoms and transition metals and their use to approximate Coulomb potentials , 1997 .
[35] N. Sheppard. Hydrogen Bonding , 1971, Nature.
[36] A. Becke,et al. Density-functional exchange-energy approximation with correct asymptotic behavior. , 1988, Physical review. A, General physics.
[37] Juan J. Novoa,et al. Evaluation of the Density Functional Approximation on the Computation of Hydrogen Bond Interactions , 1995 .
[38] Hans Peter Lüthi,et al. Interaction energies of van der Waals and hydrogen bonded systems calculated using density functional theory: Assessing the PW91 model , 2001 .
[39] Masuhiro Mikami,et al. Effects of basis set and electron correlation on the calculated interaction energies of hydrogen bonding complexes: MP2/cc-pV5Z calculations of H2O–MeOH,H2O–Me2O,H2O–H2CO, MeOH–MeOH, and HCOOH–HCOOH complexes , 1999 .
[40] R. Ahlrichs,et al. Efficient molecular numerical integration schemes , 1995 .
[41] S. Suhai,et al. Conformational and energetic properties of the ammonia dimer—comparison of post‐Hartree—Fock and density functional methods , 1996 .
[42] Hans-Joachim Böhm,et al. The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure , 1994, J. Comput. Aided Mol. Des..
[43] Thomas Lengauer,et al. Multiple automatic base selection: Protein–ligand docking based on incremental construction without manual intervention , 1997, J. Comput. Aided Mol. Des..
[44] A. Rappé,et al. Ab Initio Calculation of Nonbonded Interactions: Are We There Yet? , 2000 .
[45] H. Scheraga,et al. Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occurring amino acids , 1975 .
[46] Thomas Lengauer,et al. A fast flexible docking method using an incremental construction algorithm. , 1996, Journal of molecular biology.
[47] Martin Head-Gordon,et al. Quadratic configuration interaction. A general technique for determining electron correlation energies , 1987 .
[48] M. Karplus,et al. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .
[49] Christof Hättig,et al. CC2 excitation energy calculations on large molecules using the resolution of the identity approximation , 2000 .
[50] B. A. Hess,et al. Ab Initio Calculations of Supramolecular Recognition Modes. Cyclic versus Noncyclic Hydrogen Bonding in the Formic Acid/Formamide System , 1994 .
[51] Jenn-Huei Lii,et al. Directional hydrogen bonding in the MM3 force field: II , 1998, Journal of Computational Chemistry.
[52] H. Berendsen,et al. A consistent empirical potential for water–protein interactions , 1984 .
[53] Christof Hättig,et al. Implementation of RI-CC2 triplet excitation energies with an application to trans-azobenzene , 2002 .
[54] J. Bajorath,et al. Docking and scoring in virtual screening for drug discovery: methods and applications , 2004, Nature Reviews Drug Discovery.
[55] G. V. Paolini,et al. Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes , 1997, J. Comput. Aided Mol. Des..
[56] Willis B. Person,et al. Properties of Hydrogen-Bonded Complexes Obtained from the B3LYP Functional with 6-31G(d,p) and 6-31+G(d,p) Basis Sets: Comparison with MP2/6-31+G(d,p) Results and Experimental Data , 1995 .
[57] A. Schäfer,et al. Fully optimized contracted Gaussian basis sets of triple zeta valence quality for atoms Li to Kr , 1994 .
[58] William L. Jorgensen,et al. Ab Initio Study Of Hydrogen-Bonded Complexes Of Small Organic Molecules With Water , 1998 .