In vitro mimicry of in vivo KPC mutations by ceftazidime-avibactam: phenotypes, mechanisms, genetic structure and kinetics of enzymatic hydrolysis

ABSTRACT Ceftazidime-avibactam (CZA) is employed for the treatment of infections caused by Klebsiella pneumoniae carbapenemase-producing K. pneumoniae (KPC-KP). Resistance to CZA is frequently linked to point mutations in the blaKPC. We conducted in vitro simulations of in vivo blaKPC mutations using CZA. Four pre-therapy KPC-KP isolates (K1, K2, K3, and K4) were evaluated, all initially exhibited susceptibility to CZA and produced KPC-2. The crucial distinction was that following CZA treatment, the blaKPC-2 mutated in K1, K2, and K3, rendering them resistant to CZA, while K4 achieved microbiological clearance, and blaKPC-2 remained unaltered. The induction assay identified various blaKPC-2 variants, including blaKPC-25, blaKPC-127, blaKPC-100, blaKPC-128, blaKPC-137, blaKPC-138, blaKPC-144 and blaKPC-180. Our findings suggest that the resistance of KPC-KP to CZA primarily results from the emergence of KPC variants, complemented by increased blaKPC expression. A close correlation exists between avibactam concentration and the rate of increased CZA minimum Inhibitory concentration, as well as blaKPC mutation. Inadequate avibactam concentration is more likely to induce resistance in strains against CZA, there is also a higher likelihood of mutation in the blaKPC-2 and the optimal avibactam ratio remains to be determined. Simultaneously, we selected a blaKPC-33-producing K. pneumoniae strain (mutated from blaKPC-2) and induced it with imipenem and meropenem, respectively. The blaKPC-2 was detected during the process, indicating that the mutation is reversible. Clinical use of carbapenems to treat KPC variant strains increases the risk of infection, as the gene can mutate back to blaKPC-2, rendering the strain even more cross-resistant to carbapenems and CZA.

[1]  F. Hu,et al.  Klebsiella pneumoniae carbapenemase variants: the new threat to global public health , 2023, Clinical microbiology reviews.

[2]  G. Rossolini,et al.  Functional features of KPC-109, a novel 270-loop KPC-3 mutant mediating resistance to avibactam-based β-lactamase inhibitor combinations and cefiderocol. , 2023, International journal of antimicrobial agents.

[3]  A. Palmieri,et al.  A Whole-Genome Sequencing-Based Approach for the Characterization of Klebsiella pneumoniae Co-Producing KPC and OXA-48-like Carbapenemases Circulating in Sardinia, Italy , 2023, Microorganisms.

[4]  C. González‐Bello,et al.  In vitro development of imipenem/relebactam resistance in KPC-producing Klebsiella pneumoniae involves multiple mutations including OmpK36 disruption and KPC modification. , 2023, International journal of antimicrobial agents.

[5]  Jiangshui Yuan,et al.  Phenotypic and Genetic Analysis of KPC-49, a KPC-2 Variant Conferring Resistance to Ceftazidime–Avibactam and Maintaining Resistance to Imipenem and Meropenem , 2023, Infection and drug resistance.

[6]  P. Nordmann,et al.  In-vitro-obtained meropenem-vaborbactam resistance mechanisms among clinical KPC-producing Klebsiella pneumoniae isolates. , 2023, Journal of global antimicrobial resistance.

[7]  G. Sotgiu,et al.  Genomic Characterization of KPC-31 and OXA-181 Klebsiella pneumoniae Resistant to New Generation of β-Lactam/β-Lactamase Inhibitor Combinations , 2022, Antibiotics.

[8]  V. di Pilato,et al.  Deciphering variable resistance to novel carbapenem-based β-lactamase-inhibitor combinations in a multiclonal outbreak by KPC carbapenemase-producing Klebsiella pneumoniae resistant to ceftazidime/avibactam. , 2022, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[9]  W. Ko,et al.  Geographic patterns of global isolates of carbapenem-resistant Klebsiella pneumoniae and the activity of ceftazidime/avibactam, meropenem/vaborbactam, and comparators against these isolates: Results from the Antimicrobial Testing Leadership and Surveillance (ATLAS) program, 2020. , 2022, International journal of antimicrobial agents.

[10]  Brianna M. Eales,et al.  Optimal ceftazidime/avibactam dosing exposure against KPC-producing Klebsiella pneumoniae. , 2022, The Journal of antimicrobial chemotherapy.

[11]  O. Tenaillon,et al.  Klebsiella pneumoniae Carbapenemase Variants Resistant to Ceftazidime-Avibactam: an Evolutionary Overview , 2022, Antimicrobial agents and chemotherapy.

[12]  Yan Ren,et al.  Diversity of Ceftazidime-Avibactam Resistance Mechanism in KPC2-Producing Klebsiella pneumoniae Under Antibiotic Selection Pressure , 2022, Infection and drug resistance.

[13]  Jisheng Zhang,et al.  Increased Expression and Amplification of blaKPC-2 Contributes to Resistance to Ceftazidime/Avibactam in a Sequence Type 11 Carbapenem-Resistant Klebsiella pneumoniae Strain , 2022, Microbiology spectrum.

[14]  Hui Wang,et al.  Update of clinical application in ceftazidime–avibactam for multidrug-resistant Gram-negative bacteria infections , 2022, Infection.

[15]  Ling Huang,et al.  The Rapid Emergence of Ceftazidime-Avibactam Resistance Mediated by KPC Variants in Carbapenem-Resistant Klebsiella pneumoniae in Zhejiang Province, China , 2022, Antibiotics.

[16]  D. Hilbert,et al.  In Vitro Activity of Ceftolozane-Tazobactam, Imipenem-Relebactam, Ceftazidime-Avibactam, and Comparators against Pseudomonas aeruginosa Isolates Collected in United States Hospitals According to Results from the SMART Surveillance Program, 2018 to 2020 , 2022, Antimicrobial agents and chemotherapy.

[17]  F. Hu,et al.  Ceftazidime–Avibactam in Combination with Imipenem as Salvage Therapy for ST11 KPC-33-Producing Klebsiella pneumoniae , 2022, Antibiotics.

[18]  F. Herrero Ceftazidime-avibactam , 2022, Revista espanola de quimioterapia : publicacion oficial de la Sociedad Espanola de Quimioterapia.

[19]  T. Lazzarotto,et al.  In vitro activity of imipenem-relebactam activity against KPC-producing Klebsiella pneumoniae resistant to ceftazidime-avibactam and/or meropenem-vaborbactam. , 2022, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[20]  A. Carattoli,et al.  Interplay between Klebsiella pneumoniae producing KPC-31 and KPC-3 under treatment with high dosage meropenem: a case report , 2022, European Journal of Clinical Microbiology & Infectious Diseases.

[21]  Zhibo Liu,et al.  In vivo Selection of Imipenem Resistance Among Ceftazidime-Avibactam-Resistant, Imipenem-Susceptible Klebsiella pneumoniae Isolate With KPC-33 Carbapenemase , 2021, Frontiers in Microbiology.

[22]  A. Carattoli,et al.  Meropenem-Vaborbactam as Salvage Therapy for Ceftazidime-Avibactam-, Cefiderocol-Resistant ST-512 Klebsiella pneumoniae–Producing KPC-31, a D179Y Variant of KPC-3 , 2021, Open forum infectious diseases.

[23]  R. Cantón,et al.  Emergence of the New KPC-49 Variant Conferring an ESBL Phenotype with Resistance to Ceftazidime-Avibactam in the ST131-H30R1 Escherichia coli High-Risk Clone , 2021, Pathogens.

[24]  Shirong Li,et al.  Emergence and Recovery of Ceftazidime-avibactam Resistance in blaKPC-33-Harboring Klebsiella pneumoniae Sequence Type 11 Isolates in China. , 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[25]  V. di Pilato,et al.  KPC-53, a KPC-3 Variant of Clinical Origin Associated with Reduced Susceptibility to Ceftazidime-Avibactam , 2020, Antimicrobial Agents and Chemotherapy.

[26]  A. Antoniadou,et al.  Emergence of ceftazidime-avibactam resistance through distinct genomic adaptations in KPC-2-producing Klebsiella pneumoniae of sequence type 39 during treatment , 2020, European Journal of Clinical Microbiology & Infectious Diseases.

[27]  Yongjun Wu,et al.  Klebsiella pneumoniae: an increasing threat to public health , 2020, Annals of Clinical Microbiology and Antimicrobials.

[28]  Y. Doi Treatment Options for Carbapenem-resistant Gram-negative Bacterial Infections , 2019, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[29]  P. Nordmann,et al.  Phenotypic, Biochemical, and Genetic Analysis of KPC-41, a KPC-3 Variant Conferring Resistance to Ceftazidime-Avibactam and Exhibiting Reduced Carbapenemase Activity , 2019, Antimicrobial Agents and Chemotherapy.

[30]  K. Beis,et al.  OmpK36-mediated Carbapenem resistance attenuates ST258 Klebsiella pneumoniae in vivo , 2019, Nature Communications.

[31]  M. Bassetti,et al.  KPC-producing Klebsiella pneumoniae gut decolonisation following ceftazidime/avibactam-based combination therapy: A retrospective observational study. , 2019, Journal of global antimicrobial resistance.

[32]  B. Cao,et al.  Phenotypic and Genotypic Characterization of Carbapenem-resistant Enterobacteriaceae: Data From a Longitudinal Large-scale CRE Study in China (2012-2016). , 2018, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[33]  D. Landman,et al.  Effect of Porins and blaKPC Expression on Activity of Imipenem with Relebactam in Klebsiella pneumoniae: Can Antibiotic Combinations Overcome Resistance? , 2018, Microbial drug resistance.

[34]  H. Derendorf,et al.  Clinical Pharmacokinetics and Pharmacodynamics of Ceftazidime–Avibactam Combination: A Model-Informed Strategy for its Clinical Development , 2018, Clinical Pharmacokinetics.

[35]  K. Bush,et al.  Past and Present Perspectives on β-Lactamases , 2018, Antimicrobial Agents and Chemotherapy.

[36]  S. Antinori,et al.  Efficacy of Ceftazidime-Avibactam Salvage Therapy in Patients With Infections Caused by Klebsiella pneumoniae Carbapenemase–producing K. pneumoniae , 2018, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[37]  S. Pongolini,et al.  In vivo evolution of resistant subpopulations of KPC-producing Klebsiella pneumoniae during ceftazidime/avibactam treatment , 2018, The Journal of antimicrobial chemotherapy.

[38]  B. Kreiswirth,et al.  Pneumonia and Renal Replacement Therapy Are Risk Factors for Ceftazidime-Avibactam Treatment Failures and Resistance among Patients with Carbapenem-Resistant Enterobacteriaceae Infections , 2018, Antimicrobial Agents and Chemotherapy.

[39]  Stephania Stump,et al.  Successive Emergence of Ceftazidime-Avibactam Resistance through Distinct Genomic Adaptations in blaKPC-2-Harboring Klebsiella pneumoniae Sequence Type 307 Isolates , 2017, Antimicrobial Agents and Chemotherapy.

[40]  M. Dudley,et al.  Meropenem-Vaborbactam Resistance Selection, Resistance Prevention, and Molecular Mechanisms in Mutants of KPC-Producing Klebsiella pneumoniae , 2017, Antimicrobial Agents and Chemotherapy.

[41]  B. Kreiswirth,et al.  Emergence of Ceftazidime-Avibactam Resistance and Restoration of Carbapenem Susceptibility in Klebsiella pneumoniae Carbapenemase-Producing K pneumoniae: A Case Report and Review of Literature , 2017, Open forum infectious diseases.

[42]  B. Kreiswirth,et al.  Identifying Spectra of Activity and Therapeutic Niches for Ceftazidime-Avibactam and Imipenem-Relebactam against Carbapenem-Resistant Enterobacteriaceae , 2017, Antimicrobial Agents and Chemotherapy.

[43]  Xiaoling Ma,et al.  Systematic review and meta-analysis of mortality of patients infected with carbapenem-resistant Klebsiella pneumoniae , 2017, Annals of Clinical Microbiology and Antimicrobials.

[44]  B. Kreiswirth,et al.  Emergence of Ceftazidime-Avibactam Resistance Due to Plasmid-Borne blaKPC-3 Mutations during Treatment of Carbapenem-Resistant Klebsiella pneumoniae Infections , 2016, Antimicrobial Agents and Chemotherapy.

[45]  Ronald N. Jones,et al.  High Rates of Nonsusceptibility to Ceftazidime-avibactam and Identification of New Delhi Metallo-β-lactamase Production in Enterobacteriaceae Bloodstream Infections at a Major Cancer Center. , 2016, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[46]  R. Bonomo,et al.  Activity of ceftazidime/avibactam against isogenic strains of Escherichia coli containing KPC and SHV β-lactamases with single amino acid substitutions in the Ω-loop. , 2015, The Journal of antimicrobial chemotherapy.

[47]  Hui Wang,et al.  Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases. , 2013, The Lancet. Infectious diseases.

[48]  V. Temper,et al.  A carbapenem-resistant Klebsiella pneumoniae epidemic clone in Jerusalem: sequence type 512 carrying a plasmid encoding aac(6')-Ib. , 2012, The Journal of antimicrobial chemotherapy.

[49]  Ronald N. Jones,et al.  Pharmacodynamics of β-Lactamase Inhibition by NXL104 in Combination with Ceftaroline: Examining Organisms with Multiple Types of β-Lactamases , 2011, Antimicrobial Agents and Chemotherapy.

[50]  Y. Carmeli,et al.  Containment of a country-wide outbreak of carbapenem-resistant Klebsiella pneumoniae in Israeli hospitals via a nationally implemented intervention. , 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[51]  John P. Quinn,et al.  The spread of Klebsiella pneumoniae carbapenemases: a tale of strains, plasmids, and transposons. , 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[52]  Y. Carmeli,et al.  Molecular Epidemiology of KPC-Producing Klebsiella pneumoniae Isolates in the United States: Clonal Expansion of Multilocus Sequence Type 258 , 2009, Antimicrobial Agents and Chemotherapy.

[53]  K. Bush,et al.  Novel Carbapenem-Hydrolyzing β-Lactamase, KPC-1, from a Carbapenem-Resistant Strain of Klebsiella pneumoniae , 2008, Antimicrobial Agents and Chemotherapy.

[54]  L. Piddock Clinically Relevant Chromosomally Encoded Multidrug Resistance Efflux Pumps in Bacteria , 2006, Clinical Microbiology Reviews.

[55]  A. Carattoli,et al.  High rate of colistin resistance among patients with carbapenem-resistant Klebsiella pneumoniae infection accounts for an excess of mortality. , 2013, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[56]  REVIEWS OF ANTI-INFECTIVE AGENTS: Louis Saravolatz, Section Editor OF ANTI-INFECTIVE AGENTS Ceftazidime/Avibactam, Meropenem/Vaborbactam, or Both? Clinical and Formulary Considerations , 2022 .